C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: THO complex 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125676 THOC2 9606 - X:123600561-123733056 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000245838 THOC2-201 123600562-123733054 protein_coding
  ENST00000355725 THOC2-001 123610198-123733056 protein_coding
  ENST00000416618 THOC2-014 123610198-123620948 protein_coding
  ENST00000419789 THOC2-016 123697726-123712904 processed_transcript
  ENST00000432353 THOC2-010 123602100-123621579 nonsense_mediated_decay
  ENST00000433883 THOC2-017 123668308-123733037 nonsense_mediated_decay
  ENST00000438358 THOC2-008 123621519-123626636 protein_coding
  ENST00000441692 THOC2-009 123600569-123622845 protein_coding
  ENST00000448128 THOC2-003 123600561-123621159 protein_coding
  ENST00000455053 THOC2-013 123603449-123613554 protein_coding
  ENST00000459945 THOC2-004 123621523-123623625 retained_intron
  ENST00000464161 THOC2-005 123623513-123624609 retained_intron
  ENST00000464604 THOC2-011 123620327-123621181 retained_intron
  ENST00000464982 THOC2-006 123621475-123623042 retained_intron
  ENST00000464992 THOC2-007 123611500-123620670 retained_intron
  ENST00000491737 THOC2-020 123610921-123697687 protein_coding
  ENST00000492203 THOC2-015 123600800-123614153 processed_transcript
  ENST00000496830 THOC2-012 123613530-123620178 retained_intron
  ENST00000497887 THOC2-018 123601209-123620205 processed_transcript
  ENST00000618150 THOC2-202 123601880-123623328 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000245838ENST00000355725ENST00000441692ENST00000448128ENST00000464161ENST00000491737ENST00000497887ENST00000618150
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000245838 1.919±0.00 2.001±0.00 N/A 1.872±0.80 1.712±0.00 1.771±0.00 1.768±0.00 1.830±0.00 0.489±0.00 0.724±0.00 0.856±0.20 2.313±1.03 1.467±0.47 1.732±0.00
ENST00000355725 1.694±0.00 N/A 2.142±0.00 1.115±0.00 2.546±0.00 5.365±0.00 0.633±0.00 N/A 4.949±0.00 2.514±0.00 N/A 6.928±0.00 N/A N/A
ENST00000441692 N/A 2.148±0.00 N/A N/A 1.455±0.00 N/A N/A 1.760±0.00 0.550±0.00 1.140±0.00 N/A 2.993±0.56 N/A N/A
ENST00000448128 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.460±0.00 N/A 4.927±0.00 N/A N/A
ENST00000464161 N/A N/A 10.886±0.00 N/A N/A N/A N/A N/A N/A N/A 4.986±0.00 N/A N/A N/A
ENST00000491737 1.193±0.00 3.134±0.00 0.897±0.00 2.082±0.00 3.937±1.87 4.387±0.00 2.096±0.00 2.501±1.83 1.852±1.17 1.886±0.00 1.325±1.02 3.705±1.29 2.665±1.90 3.409±0.08
ENST00000497887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.910±0.00 5.566±0.00 6.470±0.00
ENST00000618150 2.352±0.00 2.663±0.00 N/A N/A 2.296±0.00 4.155±0.00 N/A 2.401±0.00 1.059±0.00 1.403±0.00 1.207±0.00 N/A 1.162±0.36 6.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U7 CIL_0001U7_0001 CGP X:123184153-123733056

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000346 IDA transcription export complex
GO:0000347 IDA THO complex
GO:0000445 IDA THO complex part of transcription export complex
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0006397 IEA mRNA processing
GO:0006406 IDA mRNA export from nucleus
GO:0008380 IEA RNA splicing
GO:0016973 IDA poly(A)+ mRNA export from nucleus
GO:0046784 IDA viral mRNA export from host cell nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037503 thoc2 THO complex 2 protein_coding Danio_rerio
ENSMUSG00000037475 Thoc2 THO complex 2 protein_coding Mus_musculus
ENSMUSG00000079065 BC005561 cDNA sequence BC005561 protein_coding Mus_musculus

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