C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001U7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125675-ENSG00000125676 CGP 9606 X:123184153-123733056
GeneTranscriptPositionBiotype
ENSG00000125675 (GRIA3)
glutamate receptor, ionotropic, AMPA 3 		ENST00000460123 (GRIA3-003) 123482723-123488942 processed_transcript
ENST00000477389 (GRIA3-005) 123354909-123361323 processed_transcript
ENST00000479118 (GRIA3-004) 123184560-123253702 processed_transcript
ENST00000541091 (GRIA3-002) 123184483-123483046 protein_coding
ENST00000611689 (GRIA3-006) 123184299-123204683 protein_coding
ENST00000616590 (GRIA3-007) 123184153-123204683 protein_coding
ENST00000620443 (GRIA3-001) 123184483-123490915 protein_coding
ENST00000620581 (GRIA3-201) 123184371-123488736 protein_coding
ENST00000622768 (GRIA3-202) 123184243-123490905 protein_coding
ENSG00000125676 (THOC2)
THO complex 2 		ENST00000245838 (THOC2-201) 123600562-123733054 protein_coding
ENST00000355725 (THOC2-001) 123610198-123733056 protein_coding
ENST00000416618 (THOC2-014) 123610198-123620948 protein_coding
ENST00000419789 (THOC2-016) 123697726-123712904 processed_transcript
ENST00000432353 (THOC2-010) 123602100-123621579 nonsense_mediated_decay
ENST00000433883 (THOC2-017) 123668308-123733037 nonsense_mediated_decay
ENST00000438358 (THOC2-008) 123621519-123626636 protein_coding
ENST00000441692 (THOC2-009) 123600569-123622845 protein_coding
ENST00000448128 (THOC2-003) 123600561-123621159 protein_coding
ENST00000455053 (THOC2-013) 123603449-123613554 protein_coding
ENST00000459945 (THOC2-004) 123621523-123623625 retained_intron
ENST00000464161 (THOC2-005) 123623513-123624609 retained_intron
ENST00000464604 (THOC2-011) 123620327-123621181 retained_intron
ENST00000464982 (THOC2-006) 123621475-123623042 retained_intron
ENST00000464992 (THOC2-007) 123611500-123620670 retained_intron
ENST00000491737 (THOC2-020) 123610921-123697687 protein_coding
ENST00000492203 (THOC2-015) 123600800-123614153 processed_transcript
ENST00000496830 (THOC2-012) 123613530-123620178 retained_intron
ENST00000497887 (THOC2-018) 123601209-123620205 processed_transcript
ENST00000618150 (THOC2-202) 123601880-123623328 protein_coding
ENSG00000179101 (RP11-349N19.2)
 ENST00000416267 (RP11-349N19.2-001) 123514473-123514872 processed_pseudogene
ENSG00000228466 (TUBB4AP1)
tubulin, beta 4A class IVa pseudogene 1 		ENST00000450755 (TUBB4AP1-001) 123561642-123562966 processed_pseudogene
ENSG00000229733 (RP5-1189B24.1)
 ENST00000411430 (RP5-1189B24.1-001) 123558350-123558584 processed_pseudogene
ENSG00000232149 (FERP1)
fer (fps/fes related) tyrosine kinase (phosphoprotein NCP94) pseudogene 1 		ENST00000436391 (FERP1-001) 123603139-123603931 processed_pseudogene
CIL_0001U7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000001986-ENSMUSG00000037475 CGP 10090 X:41400854-41920674
GeneTranscriptPositionBiotype
ENSMUSG00000001986 (Gria3)
glutamate receptor, ionotropic, AMPA3 (alpha 3) 		ENSMUST00000076349 (Gria3-001) 41401304-41678601 protein_coding
ENSMUST00000115103 (Gria3-004) 41401128-41676585 protein_coding
ENSMUST00000124169 (Gria3-007) 41402740-41478661 protein_coding
ENSMUST00000126843 (Gria3-008) 41610197-41621262 retained_intron
ENSMUST00000128197 (Gria3-005) 41400854-41613099 retained_intron
ENSMUST00000139965 (Gria3-002) 41401436-41678598 nonsense_mediated_decay
ENSMUST00000148212 (Gria3-006) 41401482-41613554 retained_intron
ENSMUST00000156721 (Gria3-003) 41401398-41676592 retained_intron
ENSMUST00000165288 (Gria3-201) 41401565-41672464 protein_coding
ENSMUSG00000037475 (Thoc2)
THO complex 2 		ENSMUST00000047037 (Thoc2-001) 41794991-41911901 protein_coding
ENSMUST00000123512 (Thoc2-009) 41814198-41858954 processed_transcript
ENSMUST00000124458 (Thoc2-008) 41794991-41814246 protein_coding
ENSMUST00000127338 (Thoc2-002) 41856587-41911901 retained_intron
ENSMUST00000129915 (Thoc2-018) 41860125-41911886 nonsense_mediated_decay
ENSMUST00000130993 (Thoc2-012) 41812004-41814322 retained_intron
ENSMUST00000131259 (Thoc2-017) 41873927-41897846 nonsense_mediated_decay
ENSMUST00000134084 (Thoc2-011) 41803516-41813715 processed_transcript
ENSMUST00000143557 (Thoc2-014) 41802332-41807050 protein_coding
ENSMUST00000145586 (Thoc2-016) 41797484-41806562 protein_coding
ENSMUST00000150443 (Thoc2-006) 41814594-41830930 retained_intron
ENSMUST00000151430 (Thoc2-010) 41797110-41814620 nonsense_mediated_decay
ENSMUST00000151454 (Thoc2-003) 41879886-41899301 retained_intron
ENSMUST00000151802 (Thoc2-005) 41823408-41831072 retained_intron
ENSMUST00000152921 (Thoc2-013) 41873923-41920674 protein_coding
ENSMUST00000155369 (Thoc2-015) 41802344-41806714 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001U7_0001ENSG00000125675ENST00000460123ENST00000479118ENST00000541091ENST00000611689ENST00000616590ENST00000620443ENST00000620581ENST00000622768ENSG00000125676ENST00000245838ENST00000355725ENST00000441692ENST00000448128ENST00000464161ENST00000491737ENST00000497887ENST00000618150ENSG00000179101ENST00000416267ENSG00000228466ENST00000450755ENSG00000229733ENST00000411430ENSG00000232149ENST00000436391CIL_0001U7_0002ENSMUSG00000001986ENSMUST00000076349ENSMUST00000124169ENSMUST00000128197ENSMUST00000139965ENSMUST00000148212ENSMUST00000156721ENSMUST00000165288ENSMUSG00000037475ENSMUST00000047037ENSMUST00000123512ENSMUST00000124458ENSMUST00000134084
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125675 ENST00000460123 N/A N/A N/A N/A N/A N/A N/A 0.734±0.00 N/A N/A N/A N/A N/A N/A
ENST00000477389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479118 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A N/A N/A
ENST00000541091 0.020±0.00 0.145±0.00 0.229±0.00 4.035±0.00 0.110±0.00 0.246±0.16 0.046±0.00 N/A 0.265±0.01 N/A N/A 0.245±0.23 1.192±0.00 0.523±0.00
ENST00000611689 N/A N/A N/A N/A N/A N/A N/A 0.418±0.00 N/A 0.273±0.00 N/A N/A N/A N/A
ENST00000616590 N/A N/A N/A N/A N/A N/A N/A N/A 0.979±0.00 N/A N/A N/A N/A N/A
ENST00000620443 0.039±0.00 0.114±0.00 0.064±0.00 8.081±1.90 0.104±0.03 0.075±0.00 N/A N/A 0.076±0.00 N/A 0.037±0.03 0.151±0.14 N/A 0.350±0.16
ENST00000620581 N/A N/A N/A N/A 0.153±0.00 0.481±0.00 0.526±0.00 N/A N/A N/A N/A 0.048±0.00 0.217±0.00 0.428±0.00
ENST00000622768 N/A N/A N/A 6.243±3.76 N/A N/A N/A 0.282±0.00 N/A 0.050±0.00 N/A N/A N/A N/A
ENSG00000125676 ENST00000245838 1.919±0.00 2.001±0.00 N/A 1.872±0.80 1.712±0.00 1.771±0.00 1.768±0.00 1.830±0.00 0.489±0.00 0.724±0.00 0.856±0.20 2.313±1.03 1.467±0.47 1.732±0.00
ENST00000355725 1.694±0.00 N/A 2.142±0.00 1.115±0.00 2.546±0.00 5.365±0.00 0.633±0.00 N/A 4.949±0.00 2.514±0.00 N/A 6.928±0.00 N/A N/A
ENST00000416618 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441692 N/A 2.148±0.00 N/A N/A 1.455±0.00 N/A N/A 1.760±0.00 0.550±0.00 1.140±0.00 N/A 2.993±0.56 N/A N/A
ENST00000448128 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.460±0.00 N/A 4.927±0.00 N/A N/A
ENST00000455053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464161 N/A N/A 10.886±0.00 N/A N/A N/A N/A N/A N/A N/A 4.986±0.00 N/A N/A N/A
ENST00000464604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464992 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491737 1.193±0.00 3.134±0.00 0.897±0.00 2.082±0.00 3.937±1.87 4.387±0.00 2.096±0.00 2.501±1.83 1.852±1.17 1.886±0.00 1.325±1.02 3.705±1.29 2.665±1.90 3.409±0.08
ENST00000492203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.910±0.00 5.566±0.00 6.470±0.00
ENST00000618150 2.352±0.00 2.663±0.00 N/A N/A 2.296±0.00 4.155±0.00 N/A 2.401±0.00 1.059±0.00 1.403±0.00 1.207±0.00 N/A 1.162±0.36 6.048±0.00
ENSG00000179101 ENST00000416267 0.159±0.00 0.055±0.00 N/A 0.062±0.00 0.059±0.00 N/A N/A N/A 0.051±0.00 0.054±0.00 0.049±0.00 0.127±0.00 N/A 0.102±0.00
ENSG00000228466 ENST00000450755 0.016±0.00 0.088±0.00 N/A 0.144±0.00 0.039±0.00 N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A 0.016±0.00
ENSG00000229733 ENST00000411430 N/A 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A
ENSG00000232149 ENST00000436391 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.259±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001986 ENSMUST00000076349 0.626±0.02 2.004±0.31 1.624±0.32 7.214±1.22 0.810±0.25 0.534±0.23 0.158±0.02 0.927±0.38 0.629±0.13 1.742±0.42 0.164±0.11 0.905±0.28 0.310±0.18 0.174±0.00
ENSMUST00000115103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124169 N/A N/A N/A N/A N/A 1.833±0.06 1.130±0.00 N/A N/A N/A N/A 6.181±0.00 N/A 1.065±0.00
ENSMUST00000126843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128197 0.179±0.10 1.263±0.36 0.552±0.02 N/A 0.458±0.10 0.237±0.06 0.103±0.00 0.401±0.08 0.145±0.08 0.730±0.16 0.045±0.01 0.625±0.20 0.077±0.05 0.084±0.03
ENSMUST00000139965 0.517±0.14 4.142±0.02 N/A 15.095±0.00 0.671±0.11 0.324±0.19 0.225±0.02 0.947±0.56 0.041±0.02 1.054±0.30 0.071±0.00 1.172±0.59 0.058±0.04 0.108±0.04
ENSMUST00000148212 0.682±0.10 N/A 0.572±0.04 N/A 0.367±0.02 0.224±0.06 0.088±0.02 0.274±0.00 0.028±0.00 0.774±0.18 0.075±0.02 0.536±0.00 0.175±0.04 N/A
ENSMUST00000156721 N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.05 N/A N/A N/A N/A 0.031±0.00
ENSMUST00000165288 0.573±0.00 N/A N/A 26.434±0.00 N/A N/A N/A N/A 0.183±0.00 N/A N/A 2.050±0.00 0.097±0.00 0.104±0.00
ENSMUSG00000037475 ENSMUST00000047037 1.765±0.24 0.868±0.38 4.082±0.36 4.900±2.08 1.796±0.71 0.911±0.36 1.266±0.42 1.001±0.38 2.015±1.50 1.661±0.55 1.212±0.25 3.125±3.26 5.386±1.92 0.859±0.32
ENSMUST00000123512 N/A 3.164±0.00 N/A 9.439±0.00 N/A N/A N/A N/A N/A N/A N/A 12.232±12.46 17.411±1.04 4.434±0.00
ENSMUST00000124458 N/A 1.984±1.36 4.490±0.18 7.199±4.59 N/A 1.164±0.00 N/A 1.029±0.00 3.824±2.35 N/A 1.567±0.51 4.130±1.53 3.416±0.68 N/A
ENSMUST00000127338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134084 N/A N/A N/A 8.443±0.00 N/A N/A N/A N/A N/A N/A N/A 18.788±0.00 15.376±0.00 11.491±0.00
ENSMUST00000143557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151802 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152921 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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