C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: THO complex 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037475 Thoc2 10090 - X:41794991-41920674 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047037 Thoc2-001 41794991-41911901 protein_coding
  ENSMUST00000123512 Thoc2-009 41814198-41858954 processed_transcript
  ENSMUST00000124458 Thoc2-008 41794991-41814246 protein_coding
  ENSMUST00000127338 Thoc2-002 41856587-41911901 retained_intron
  ENSMUST00000129915 Thoc2-018 41860125-41911886 nonsense_mediated_decay
  ENSMUST00000130993 Thoc2-012 41812004-41814322 retained_intron
  ENSMUST00000131259 Thoc2-017 41873927-41897846 nonsense_mediated_decay
  ENSMUST00000134084 Thoc2-011 41803516-41813715 processed_transcript
  ENSMUST00000143557 Thoc2-014 41802332-41807050 protein_coding
  ENSMUST00000145586 Thoc2-016 41797484-41806562 protein_coding
  ENSMUST00000150443 Thoc2-006 41814594-41830930 retained_intron
  ENSMUST00000151430 Thoc2-010 41797110-41814620 nonsense_mediated_decay
  ENSMUST00000151454 Thoc2-003 41879886-41899301 retained_intron
  ENSMUST00000151802 Thoc2-005 41823408-41831072 retained_intron
  ENSMUST00000152921 Thoc2-013 41873923-41920674 protein_coding
  ENSMUST00000155369 Thoc2-015 41802344-41806714 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047037ENSMUST00000123512ENSMUST00000124458ENSMUST00000134084
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047037 1.765±0.24 0.868±0.38 4.082±0.36 4.900±2.08 1.796±0.71 0.911±0.36 1.266±0.42 1.001±0.38 2.015±1.50 1.661±0.55 1.212±0.25 3.125±3.26 5.386±1.92 0.859±0.32
ENSMUST00000123512 N/A 3.164±0.00 N/A 9.439±0.00 N/A N/A N/A N/A N/A N/A N/A 12.232±12.46 17.411±1.04 4.434±0.00
ENSMUST00000124458 N/A 1.984±1.36 4.490±0.18 7.199±4.59 N/A 1.164±0.00 N/A 1.029±0.00 3.824±2.35 N/A 1.567±0.51 4.130±1.53 3.416±0.68 N/A
ENSMUST00000134084 N/A N/A N/A 8.443±0.00 N/A N/A N/A N/A N/A N/A N/A 18.788±0.00 15.376±0.00 11.491±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U7 CIL_0001U7_0002 CGP X:41400854-41920674

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 IMP cell morphogenesis
GO:0001824 IMP blastocyst development
GO:0003729 IMP mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0010468 IMP regulation of gene expression
GO:0010793 IMP regulation of mRNA export from nucleus
GO:0017145 IMP stem cell division
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037503 thoc2 THO complex 2 protein_coding Danio_rerio
ENSG00000125676 THOC2 THO complex 2 protein_coding Homo_sapiens

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