C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBC1 domain family, member 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354200 TBC1D20-004 ENSG00000125875 9606 - 20:435480-462553 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354200
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354200 10.077±0.00 7.528±0.00 0.300±0.00 3.766±2.53 5.301±4.53 4.249±3.85 2.782±1.83 9.845±0.00 1.570±0.19 5.203±3.92 4.400±0.00 8.264±5.18 8.745±1.67 7.500±5.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0001 VISTA 20:23407-624368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001675 IEA acrosome assembly
GO:0002088 IEA lens development in camera-type eye
GO:0005097 IDA:IEA Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006888 IMP ER to Golgi vesicle-mediated transport
GO:0007030 IMP Golgi organization
GO:0007283 IEA spermatogenesis
GO:0008584 IEA male gonad development
GO:0017137 IPI Rab GTPase binding
GO:0019068 IMP virion assembly
GO:0030173 IDA integral component of Golgi membrane
GO:0031965 IDA nuclear membrane
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IMP positive regulation of Rab GTPase activity
GO:0033126 IMP positive regulation of GTP catabolic process
GO:0034389 IEA lipid particle organization
GO:0043010 IEA camera-type eye development
GO:0070309 IEA lens fiber cell morphogenesis
GO:0072520 IEA seminiferous tubule development
GO:0090110 IMP cargo loading into COPII-coated vesicle
GO:1902953 IMP positive regulation of ER to Golgi vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028963 Tbc1d20-001 protein_coding Mus_musculus 0 1602
ENSMUST00000140482 Tbc1d20-002 retained_intron Mus_musculus 0 931
ENSMUST00000147591 Tbc1d20-005 protein_coding Mus_musculus 0 667

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