C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBC1 domain family, member 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461304 TBC1D20-002 ENSG00000125875 9606 - 20:435480-462531 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000461304
Transcript ID Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000461304 1.007±0.00 0.678±0.00 1.775±0.00 2.940±2.05 2.702±0.00 5.888±0.00 3.821±0.00 8.868±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0001 VISTA 20:23407-624368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005097 IDA:IEA Rab GTPase activator activity
GO:0005515 IPI protein binding
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006888 IMP ER to Golgi vesicle-mediated transport
GO:0007030 IMP Golgi organization
GO:0017137 IPI Rab GTPase binding
GO:0019068 IMP virion assembly
GO:0030173 IDA integral component of Golgi membrane
GO:0031965 IDA nuclear membrane
GO:0032313 IEA regulation of Rab GTPase activity
GO:0032851 IMP positive regulation of Rab GTPase activity
GO:0033126 IMP positive regulation of GTP catabolic process
GO:0090110 IMP cargo loading into COPII-coated vesicle
GO:1902953 IMP positive regulation of ER to Golgi vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028963 Tbc1d20-001 protein_coding Mus_musculus 0 1580
ENSMUST00000140482 Tbc1d20-002 retained_intron Mus_musculus 0 931
ENSMUST00000147591 Tbc1d20-005 protein_coding Mus_musculus 0 667

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