C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RALY heterogeneous nuclear ribonucleoprotein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125970 RALY 9606 + 20:33993646-34108308 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000246194 RALY-002 33993722-34080271 protein_coding
  ENST00000333552 RALY-005 33993953-34077082 protein_coding
  ENST00000375114 RALY-001 33993646-34084884 protein_coding
  ENST00000413297 RALY-003 33993802-34073574 protein_coding
  ENST00000442805 RALY-007 34029861-34077129 protein_coding
  ENST00000448364 RALY-004 33993680-34076039 protein_coding
  ENST00000481580 RALY-010 34076696-34077680 retained_intron
  ENST00000488227 RALY-009 34073610-34076229 processed_transcript
  ENST00000489384 RALY-008 34077213-34108308 processed_transcript
  ENST00000493399 RALY-006 34072066-34077046 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000246194ENST00000375114ENST00000481580
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000246194 60.923±0.00 69.771±0.00 4.989±0.00 24.489±10.89 31.605±19.97 37.511±22.79 20.927±14.13 33.420±26.36 15.074±7.09 54.032±46.44 36.955±17.64 109.910±66.93 115.768±30.98 92.843±1.42
ENST00000375114 N/A 1.910±0.00 0.387±0.00 N/A N/A 1.267±0.00 N/A 0.446±0.00 0.453±0.00 0.984±0.00 N/A N/A N/A N/A
ENST00000481580 N/A N/A 1.497±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0001 VISTA 20:33968769-34569610

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059972 raly RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) protein_coding Danio_rerio
ENSMUSG00000027593 Raly hnRNP-associated with lethal yellow protein_coding Mus_musculus

Loading