C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RALY heterogeneous nuclear ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375114 RALY-001 ENSG00000125970 9606 + 20:33993646-34084884 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderColonKidneyLiverLungENST00000375114
Transcript ID Adrenal Bladder Colon Kidney Liver Lung
ENST00000375114 1.910±0.00 0.387±0.00 1.267±0.00 0.446±0.00 0.453±0.00 0.984±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0001 VISTA 20:33968769-34569610

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058089 Raly-001 protein_coding Mus_musculus 0 1266
ENSMUST00000109701 Raly-002 protein_coding Mus_musculus 0 1081
ENSMUST00000129137 Raly-006 protein_coding Mus_musculus 0 889
ENSMUST00000029120 Raly-003 protein_coding Mus_musculus 0 640
ENSMUST00000116389 Raly-201 protein_coding Mus_musculus 0 632
ENSMUST00000125872 Raly-007 protein_coding Mus_musculus 0 534
ENSMUST00000140713 Raly-004 protein_coding Mus_musculus 0 455

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