C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RALY heterogeneous nuclear ribonucleoprotein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000246194 RALY-002 ENSG00000125970 9606 + 20:33993722-34080271 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000246194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000246194 60.923±0.00 69.771±0.00 4.989±0.00 24.489±10.89 31.605±19.97 37.511±22.79 20.927±14.13 33.420±26.36 15.074±7.09 54.032±46.44 36.955±17.64 109.910±66.93 115.768±30.98 92.843±1.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0001 VISTA 20:33968769-34569610

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029120 Raly-003 protein_coding Mus_musculus 0 1315
ENSMUST00000116389 Raly-201 protein_coding Mus_musculus 0 1131
ENSMUST00000140713 Raly-004 protein_coding Mus_musculus 0 894
ENSMUST00000058089 Raly-001 protein_coding Mus_musculus 0 640
ENSMUST00000109701 Raly-002 protein_coding Mus_musculus 0 634
ENSMUST00000129137 Raly-006 protein_coding Mus_musculus 0 540
ENSMUST00000125872 Raly-007 protein_coding Mus_musculus 0 455

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