C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: hnRNP-associated with lethal yellow
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027593 Raly 10090 + 2:154791096-154867261 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029120 Raly-003 154791133-154867244 protein_coding
  ENSMUST00000058089 Raly-001 154791157-154867261 protein_coding
  ENSMUST00000109701 Raly-002 154791096-154867245 protein_coding
  ENSMUST00000116389 Raly-201 154791110-154867261 protein_coding
  ENSMUST00000125872 Raly-007 154791118-154861933 protein_coding
  ENSMUST00000129137 Raly-006 154791106-154863836 protein_coding
  ENSMUST00000140713 Raly-004 154791352-154864049 protein_coding
  ENSMUST00000145202 Raly-008 154791369-154857338 processed_transcript
  ENSMUST00000151578 Raly-009 154791715-154857451 processed_transcript
  ENSMUST00000152038 Raly-005 154791354-154848491 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058089ENSMUST00000109701ENSMUST00000129137ENSMUST00000140713ENSMUST00000151578ENSMUST00000152038
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058089 82.254±37.81 73.331±11.94 53.233±19.65 31.722±20.48 45.045±16.89 63.767±4.97 29.400±1.30 45.633±7.44 72.222±53.49 54.234±4.23 11.054±4.82 102.447±22.96 39.731±25.93 17.486±3.26
ENSMUST00000109701 33.546±12.12 N/A 16.104±4.92 23.034±2.67 22.472±4.15 N/A 9.839±1.49 15.502±3.64 27.763±10.27 11.379±0.20 9.314±2.77 27.254±9.46 22.519±0.00 4.865±0.45
ENSMUST00000129137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 41.322±2.62 33.918±0.00 N/A
ENSMUST00000140713 65.939±6.59 83.543±14.64 17.719±4.19 20.416±0.00 44.960±16.81 47.528±5.10 8.976±1.24 20.643±5.22 20.798±16.65 45.752±14.44 5.743±0.06 69.007±16.80 23.621±6.01 11.565±1.04
ENSMUST00000151578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 63.369±0.00 N/A
ENSMUST00000152038 N/A 39.610±5.46 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098F CIL_00098F_0002 VISTA 2:154750090-155352094

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059972 raly RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) protein_coding Danio_rerio
ENSG00000125970 RALY RALY heterogeneous nuclear ribonucleoprotein protein_coding Homo_sapiens

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