C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SR-related CTD-associated factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000126461 SCAF1 9606 + 19:49642125-49658642 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000360565 SCAF1-001 49642125-49658642 protein_coding
  ENST00000595242 SCAF1-004 49644923-49646619 protein_coding
  ENST00000598359 SCAF1-005 49642660-49650998 protein_coding
  ENST00000601038 SCAF1-003 49644830-49646558 protein_coding
  ENST00000622360 SCAF1-201 49645020-49658641 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360565ENST00000622360
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360565 N/A N/A N/A N/A 1.598±0.00 N/A N/A N/A N/A 0.718±0.00 N/A 5.240±0.00 10.210±0.00 10.087±0.00
ENST00000622360 36.367±0.00 21.585±0.00 1.291±0.00 22.609±20.51 30.749±0.00 22.948±0.00 6.502±6.06 10.493±9.42 9.565±0.00 17.232±0.00 18.795±16.89 41.968±25.02 17.733±10.58 27.702±21.23

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0019904 IEA protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054010 scaf1 SR-related CTD-associated factor 1 protein_coding Danio_rerio
ENSMUSG00000038406 Scaf1 SR-related CTD-associated factor 1 protein_coding Mus_musculus

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