C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SR-related CTD-associated factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038406 Scaf1 10090 - 7:45002948-45016363 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000085383 Scaf1-001 45002948-45016363 protein_coding
  ENSMUST00000117282 Scaf1-003 45002948-45014404 protein_coding
  ENSMUST00000131262 Scaf1-006 45014204-45014936 processed_transcript
  ENSMUST00000139035 Scaf1-007 45012158-45013561 retained_intron
  ENSMUST00000148227 Scaf1-004 45002948-45013973 retained_intron
  ENSMUST00000151264 Scaf1-005 45013252-45015857 protein_coding
  ENSMUST00000153243 Scaf1-002 45010260-45016131 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085383ENSMUST00000117282ENSMUST00000148227ENSMUST00000153243
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085383 3.268±0.37 N/A 4.195±0.00 N/A N/A N/A 1.552±0.00 1.474±0.00 2.392±0.45 3.128±0.00 2.113±0.19 9.425±0.00 8.472±5.95 2.761±0.38
ENSMUST00000117282 12.127±3.32 16.836±0.92 16.955±0.26 35.882±17.56 15.829±3.61 21.819±5.35 7.451±2.20 10.489±1.89 7.742±2.93 18.498±2.32 7.450±1.88 21.451±6.85 13.685±10.26 4.105±1.09
ENSMUST00000148227 3.113±0.66 4.918±0.32 3.421±0.00 4.406±0.00 3.966±0.97 5.769±0.76 1.398±0.35 1.693±0.24 1.335±0.30 4.619±0.30 N/A 6.911±1.17 2.428±0.89 1.329±0.18
ENSMUST00000153243 N/A N/A N/A N/A 3.449±0.00 N/A N/A N/A N/A N/A N/A 6.622±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0019904 IEA protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054010 scaf1 SR-related CTD-associated factor 1 protein_coding Danio_rerio
ENSG00000126461 SCAF1 SR-related CTD-associated factor 1 protein_coding Homo_sapiens

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