C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SR-related CTD-associated factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360565 SCAF1-001 ENSG00000126461 9606 + 19:49642125-49658642 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLungOvaryPlacentaTestisENST00000360565
Transcript ID Breast Lung Ovary Placenta Testis
ENST00000360565 1.598±0.00 0.718±0.00 5.240±0.00 10.210±0.00 10.087±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0019904 IEA protein domain specific binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085383 Scaf1-001 protein_coding Mus_musculus 0 1869
ENSMUST00000117282 Scaf1-003 protein_coding Mus_musculus 0 1869
ENSMUST00000148227 Scaf1-004 retained_intron Mus_musculus 0 1869
ENSDART00000113219 TNRC6A-201 protein_coding Danio_rerio 0.00001 58

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