C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear speckle splicing regulatory protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000126653 NSRP1 9606 + 17:30115521-30186475 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000247026 NSRP1-001 30116781-30186475 protein_coding
  ENST00000394826 NSRP1-005 30116820-30185744 nonsense_mediated_decay
  ENST00000467446 NSRP1-009 30117154-30172592 retained_intron
  ENST00000475652 NSRP1-002 30116829-30185193 nonsense_mediated_decay
  ENST00000479218 NSRP1-007 30116827-30128236 protein_coding
  ENST00000540900 NSRP1-004 30115521-30185847 processed_transcript
  ENST00000577289 NSRP1-015 30116819-30180934 processed_transcript
  ENST00000580103 NSRP1-008 30117172-30184630 protein_coding
  ENST00000581048 NSRP1-011 30117966-30179192 processed_transcript
  ENST00000583301 NSRP1-012 30116839-30150666 processed_transcript
  ENST00000584154 NSRP1-010 30116819-30179235 nonsense_mediated_decay
  ENST00000584317 NSRP1-013 30116830-30179120 nonsense_mediated_decay
  ENST00000584423 NSRP1-006 30116781-30128163 protein_coding
  ENST00000585881 NSRP1-003 30116992-30179144 protein_coding
  ENST00000588614 NSRP1-014 30118038-30179264 protein_coding
  ENST00000589608 NSRP1-016 30118080-30178164 nonsense_mediated_decay
  ENST00000612959 NSRP1-201 30116807-30186474 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000247026ENST00000394826ENST00000475652ENST00000540900ENST00000581048ENST00000583301ENST00000584423ENST00000588614ENST00000612959
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000247026 1.760±0.00 N/A N/A 2.800±0.00 1.014±0.16 4.461±0.00 2.097±1.91 1.862±1.62 0.937±0.02 0.581±0.25 2.580±0.00 4.573±4.15 1.795±0.00 9.246±0.00
ENST00000394826 4.770±0.00 4.250±0.00 N/A 6.070±0.00 4.071±0.00 6.282±0.00 2.680±0.00 2.619±0.00 N/A 2.384±0.00 2.342±0.00 4.438±0.00 6.909±5.72 10.671±4.26
ENST00000475652 N/A N/A 0.432±0.00 N/A 1.111±0.00 N/A N/A 0.347±0.00 0.859±0.00 N/A 0.122±0.00 N/A N/A N/A
ENST00000540900 N/A N/A N/A N/A N/A 0.237±0.00 N/A N/A N/A N/A N/A N/A N/A 5.114±0.00
ENST00000581048 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.863±0.00 N/A N/A N/A N/A
ENST00000583301 N/A N/A 3.376±0.00 N/A N/A N/A 0.753±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000584423 N/A N/A N/A N/A N/A N/A N/A 1.400±0.00 N/A N/A N/A N/A N/A N/A
ENST00000588614 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.264±0.00 N/A N/A N/A N/A
ENST00000612959 5.591±0.00 2.394±0.00 N/A 1.652±1.32 4.692±0.00 2.275±1.55 1.285±0.00 1.739±0.00 3.119±0.00 2.192±2.00 1.197±1.10 3.364±0.00 2.512±0.71 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0006913 IDA nucleocytoplasmic transport
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0030529 IDA ribonucleoprotein complex
GO:0032502 IMP developmental process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015221 nsrp1 nuclear speckle splicing regulatory protein 1 protein_coding Danio_rerio
ENSMUSG00000037958 Ccdc55 coiled-coil domain containing 55 protein_coding Mus_musculus

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