C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear speckle splicing regulatory protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000247026 NSRP1-001 ENSG00000126653 9606 + 17:30116781-30186475 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000247026
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000247026 1.760±0.00 2.800±0.00 1.014±0.16 4.461±0.00 2.097±1.91 1.862±1.62 0.937±0.02 0.581±0.25 2.580±0.00 4.573±4.15 1.795±0.00 9.246±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0006913 IDA nucleocytoplasmic transport
GO:0008380 IEA RNA splicing
GO:0016607 IDA nuclear speck
GO:0030529 IDA ribonucleoprotein complex
GO:0032502 IMP developmental process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102494 Ccdc55-001 protein_coding Mus_musculus 0 1223
ENSMUST00000127758 Ccdc55-002 protein_coding Mus_musculus 0 276
ENSMUST00000134685 Ccdc55-003 processed_transcript Mus_musculus 0 263

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