C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 55
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037958 Ccdc55 10090 - 11:77044292-77078435 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102494 Ccdc55-001 77044292-77078435 protein_coding
  ENSMUST00000127758 Ccdc55-002 77050635-77078037 protein_coding
  ENSMUST00000134685 Ccdc55-003 77054494-77078435 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102494ENSMUST00000134685
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102494 0.852±0.36 0.456±0.14 2.378±0.02 6.328±5.70 0.552±0.27 0.968±0.14 0.870±0.10 1.112±0.33 2.007±1.63 1.315±0.27 3.004±0.42 3.808±6.89 10.361±7.56 18.579±30.33
ENSMUST00000134685 N/A N/A N/A N/A N/A N/A N/A 0.979±0.22 0.661±0.20 N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003729 ISS mRNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006397 IEA mRNA processing
GO:0006913 ISS nucleocytoplasmic transport
GO:0008380 IEA RNA splicing
GO:0016607 ISS nuclear speck
GO:0030529 ISS ribonucleoprotein complex
GO:0032502 ISS developmental process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015221 nsrp1 nuclear speckle splicing regulatory protein 1 protein_coding Danio_rerio
ENSG00000126653 NSRP1 nuclear speckle splicing regulatory protein 1 protein_coding Homo_sapiens

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