C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 214kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000126883 NUP214 9606 + 9:131125561-131234670 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359428 NUP214-001 131125561-131234670 protein_coding
  ENST00000411637 NUP214-010 131125586-131234663 protein_coding
  ENST00000451030 NUP214-201 131126034-131233701 protein_coding
  ENST00000453861 NUP214-028 131187312-131233701 nonsense_mediated_decay
  ENST00000465486 NUP214-019 131190126-131197843 processed_transcript
  ENST00000470765 NUP214-005 131187358-131197687 processed_transcript
  ENST00000476004 NUP214-006 131228224-131233707 protein_coding
  ENST00000483497 NUP214-009 131190121-131233703 protein_coding
  ENST00000489260 NUP214-008 131163100-131164549 retained_intron
  ENST00000496921 NUP214-004 131228518-131233008 retained_intron
  ENST00000498010 NUP214-007 131228175-131232469 protein_coding
  ENST00000524578 NUP214-020 131187114-131195341 retained_intron
  ENST00000525384 NUP214-024 131192124-131197886 retained_intron
  ENST00000525561 NUP214-013 131132646-131135266 retained_intron
  ENST00000525980 NUP214-011 131144702-131195658 retained_intron
  ENST00000526346 NUP214-021 131174168-131192292 nonsense_mediated_decay
  ENST00000526412 NUP214-012 131128528-131130836 processed_transcript
  ENST00000528114 NUP214-022 131190143-131197613 processed_transcript
  ENST00000528406 NUP214-027 131228294-131233704 protein_coding
  ENST00000529286 NUP214-026 131197338-131198332 processed_transcript
  ENST00000530491 NUP214-023 131222498-131228228 retained_intron
  ENST00000530630 NUP214-017 131149951-131151884 processed_transcript
  ENST00000530843 NUP214-014 131133197-131139349 processed_transcript
  ENST00000530863 NUP214-015 131135988-131146193 protein_coding
  ENST00000531584 NUP214-025 131126080-131129311 protein_coding
  ENST00000531600 NUP214-018 131190139-131198648 protein_coding
  ENST00000531929 NUP214-016 131175720-131197330 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359428ENST00000411637ENST00000451030ENST00000453861ENST00000476004
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359428 2.033±0.00 N/A 0.496±0.00 N/A 1.895±0.09 N/A 2.369±0.36 0.966±0.25 2.021±1.05 N/A 3.072±2.04 2.065±0.57 8.978±0.00
ENST00000411637 N/A 2.938±0.00 1.603±0.58 1.150±0.40 N/A 1.157±0.56 2.097±0.00 0.579±0.00 1.015±0.00 2.360±1.23 2.365±0.39 1.279±0.10 6.083±0.54
ENST00000451030 N/A 3.365±0.00 N/A N/A N/A N/A N/A 0.928±0.00 N/A N/A 2.232±0.23 2.143±0.35 N/A
ENST00000453861 5.636±0.00 N/A 3.742±0.00 N/A 3.792±0.00 2.288±0.00 6.329±0.00 2.660±0.00 2.850±0.00 5.657±0.00 6.904±1.44 3.797±0.49 30.897±0.00
ENST00000476004 N/A N/A N/A N/A N/A N/A N/A N/A 14.275±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088E CIL_00088E_0001 VISTA 9:131030990-131632063
CIL_0006IL CIL_0006IL_0001 CGP 9:131096476-131234670
CIL_0002EO CIL_0002EO_0002 CGP 9:131125561-131276547

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005215 TAS transporter activity
GO:0005487 IEA nucleocytoplasmic transporter activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005643 IEA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0005975 TAS carbohydrate metabolic process
GO:0006406 IEA mRNA export from nucleus
GO:0006606 IEA protein import into nucleus
GO:0006611 IMP protein export from nucleus
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010467 TAS gene expression
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044281 TAS small molecule metabolic process
GO:0051726 IEA regulation of cell cycle
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016212 nup214 nucleoporin 214 protein_coding Danio_rerio
ENSMUSG00000001855 Nup214 nucleoporin 214 protein_coding Mus_musculus

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