C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 214kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000359428 NUP214-001 ENSG00000126883 9606 + 9:131125561-131234670 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyLiverLungOvaryPlacentaTestisENST00000359428
Transcript ID Adipose Brain Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000359428 2.033±0.00 0.496±0.00 1.895±0.09 2.369±0.36 0.966±0.25 2.021±1.05 3.072±2.04 2.065±0.57 8.978±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088E CIL_00088E_0001 VISTA 9:131030990-131632063
CIL_0006IL CIL_0006IL_0001 CGP 9:131096476-131234670
CIL_0002EO CIL_0002EO_0002 CGP 9:131125561-131276547

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005215 TAS transporter activity
GO:0005487 IEA nucleocytoplasmic transporter activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005643 IEA nuclear pore
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0005975 TAS carbohydrate metabolic process
GO:0006406 IEA mRNA export from nucleus
GO:0006606 IEA protein import into nucleus
GO:0006611 IMP protein export from nucleus
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010467 TAS gene expression
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044281 TAS small molecule metabolic process
GO:0051726 IEA regulation of cell cycle
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065398 Nup214-001 protein_coding Mus_musculus 0 2710
ENSMUST00000138012 Nup214-008 protein_coding Mus_musculus 0 1321
ENSMUST00000129496 Nup214-003 processed_transcript Mus_musculus 0 667
ENSMUST00000130975 Nup214-002 processed_transcript Mus_musculus 0 612

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