C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein (C3H2C3 type) 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000127870 RNF6 9606 - 13:26132115-26222493 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000346166 RNF6-001 26212762-26221842 protein_coding
  ENST00000381570 RNF6-002 26212775-26221703 protein_coding
  ENST00000381588 RNF6-006 26212768-26222493 protein_coding
  ENST00000468480 RNF6-007 26132115-26222261 processed_transcript
  ENST00000474280 RNF6-003 26221253-26222089 processed_transcript
  ENST00000476347 RNF6-005 26219296-26221691 processed_transcript
  ENST00000498039 RNF6-004 26215139-26221810 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000346166ENST00000381570ENST00000381588ENST00000468480
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000346166 4.831±0.00 6.282±0.00 1.087±0.00 8.514±3.13 4.306±0.00 3.933±0.63 2.514±0.69 4.084±1.77 2.916±0.74 5.449±1.28 2.278±1.50 7.189±3.59 4.039±2.62 13.674±2.33
ENST00000381570 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.829±0.00 N/A N/A 0.475±0.00 5.087±2.04
ENST00000381588 0.857±0.00 2.112±0.00 1.154±0.00 1.807±0.35 2.060±0.12 1.332±0.30 1.542±0.98 1.605±0.00 0.767±0.00 0.970±0.00 1.951±0.00 2.092±0.25 1.835±0.49 N/A
ENST00000468480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.447±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MF CIL_0004MF_0001 CGP 13:26132115-26405238

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004842 IMP ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016605 IEA PML body
GO:0016874 IEA ligase activity
GO:0030424 ISS axon
GO:0030517 ISS negative regulation of axon extension
GO:0031965 IDA nuclear membrane
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044314 IDA protein K27-linked ubiquitination
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0050681 IPI androgen receptor binding
GO:0060765 IMP regulation of androgen receptor signaling pathway
GO:0070936 ISS protein K48-linked ubiquitination
GO:0085020 IDA protein K6-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000029634 Rnf6 ring finger protein (C3H2C3 type) 6 protein_coding Mus_musculus

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