C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein (C3H2C3 type) 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029634 Rnf6 10090 - 5:146209192-146221555 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067837 Rnf6-003 146209957-146220976 protein_coding
  ENSMUST00000159074 Rnf6-007 146211853-146220948 protein_coding
  ENSMUST00000161331 Rnf6-004 146211704-146220935 protein_coding
  ENSMUST00000161574 Rnf6-002 146211676-146221418 protein_coding
  ENSMUST00000161725 Rnf6-006 146218079-146220946 processed_transcript
  ENSMUST00000161859 Rnf6-001 146209192-146221555 protein_coding
  ENSMUST00000162219 Rnf6-005 146211303-146217989 protein_coding
  ENSMUST00000169407 Rnf6-201 146209196-146220901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067837ENSMUST00000161574ENSMUST00000161859ENSMUST00000162219ENSMUST00000169407
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067837 5.834±0.46 N/A 4.461±0.51 13.110±12.35 4.466±1.52 2.436±0.45 2.625±0.58 7.417±2.74 3.141±1.06 2.378±0.22 2.896±0.53 7.964±6.49 11.286±7.82 12.765±9.30
ENSMUST00000161574 N/A 8.593±1.82 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161859 5.729±1.50 8.508±1.63 8.007±1.21 3.182±1.89 4.162±1.05 4.781±1.88 4.253±1.72 9.178±1.27 4.700±1.08 7.363±1.61 6.745±1.12 4.986±2.45 4.306±2.39 8.948±3.00
ENSMUST00000162219 N/A N/A N/A N/A 5.492±0.59 8.130±2.45 N/A N/A N/A N/A N/A 14.244±6.75 N/A 30.560±0.00
ENSMUST00000169407 N/A N/A N/A 7.912±0.00 1.993±0.00 3.146±0.00 N/A 2.840±0.00 3.118±1.15 3.105±0.26 N/A 4.935±2.65 5.408±3.76 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004MF CIL_0004MF_0002 CGP 5:146209192-146302874

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0006355 ISS regulation of transcription, DNA-templated
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016567 IDA protein ubiquitination
GO:0016605 IDA PML body
GO:0016874 IEA ligase activity
GO:0030424 IDA axon
GO:0030517 IGI negative regulation of axon extension
GO:0031965 IEA nuclear membrane
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044314 ISS protein K27-linked ubiquitination
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0050681 ISS androgen receptor binding
GO:0060765 ISS regulation of androgen receptor signaling pathway
GO:0070936 IMP protein K48-linked ubiquitination
GO:0085020 ISS protein K6-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000127870 RNF6 ring finger protein (C3H2C3 type) 6 protein_coding Homo_sapiens

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