C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004MF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000127870-ENSG00000132964 CGP 9606 13:26132115-26405238
GeneTranscriptPositionBiotype
ENSG00000127870 (RNF6)
ring finger protein (C3H2C3 type) 6 		ENST00000346166 (RNF6-001) 26212762-26221842 protein_coding
ENST00000381570 (RNF6-002) 26212775-26221703 protein_coding
ENST00000381588 (RNF6-006) 26212768-26222493 protein_coding
ENST00000468480 (RNF6-007) 26132115-26222261 processed_transcript
ENST00000474280 (RNF6-003) 26221253-26222089 processed_transcript
ENST00000476347 (RNF6-005) 26219296-26221691 processed_transcript
ENST00000498039 (RNF6-004) 26215139-26221810 processed_transcript
ENSG00000132964 (CDK8)
cyclin-dependent kinase 8 		ENST00000381527 (CDK8-001) 26254139-26405238 protein_coding
ENST00000465820 (CDK8-005) 26385211-26401599 processed_transcript
ENST00000477277 (CDK8-002) 26396217-26405178 processed_transcript
ENST00000477290 (CDK8-004) 26337567-26400515 processed_transcript
ENST00000480323 (CDK8-003) 26400073-26405238 processed_transcript
ENST00000536792 (CDK8-201) 26254642-26404081 protein_coding
ENSG00000227882 (PRKRIRP6)
protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 6 		ENST00000431978 (PRKRIRP6-001) 26234213-26237129 processed_pseudogene
ENSG00000278413 (uc_338)
TUC338 		ENST00000617467 (uc_338.1-233) 26359529-26359702 misc_RNA
CIL_0004MF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029634-ENSMUSG00000029635 CGP 10090 5:146209192-146302874
GeneTranscriptPositionBiotype
ENSMUSG00000029634 (Rnf6)
ring finger protein (C3H2C3 type) 6 		ENSMUST00000067837 (Rnf6-003) 146209957-146220976 protein_coding
ENSMUST00000159074 (Rnf6-007) 146211853-146220948 protein_coding
ENSMUST00000161331 (Rnf6-004) 146211704-146220935 protein_coding
ENSMUST00000161574 (Rnf6-002) 146211676-146221418 protein_coding
ENSMUST00000161725 (Rnf6-006) 146218079-146220946 processed_transcript
ENSMUST00000161859 (Rnf6-001) 146209192-146221555 protein_coding
ENSMUST00000162219 (Rnf6-005) 146211303-146217989 protein_coding
ENSMUST00000169407 (Rnf6-201) 146209196-146220901 protein_coding
ENSMUSG00000029635 (Cdk8)
cyclin-dependent kinase 8 		ENSMUST00000031640 (Cdk8-001) 146231288-146302874 protein_coding
ENSMUST00000159467 (Cdk8-005) 146231385-146271664 protein_coding
ENSMUST00000159615 (Cdk8-004) 146294910-146302819 retained_intron
ENSMUST00000160924 (Cdk8-007) 146296365-146299512 retained_intron
ENSMUST00000161181 (Cdk8-002) 146231250-146302831 protein_coding
ENSMUST00000161652 (Cdk8-006) 146231288-146292744 protein_coding
ENSMUST00000162494 (Cdk8-003) 146231230-146302874 nonsense_mediated_decay
ENSMUSG00000080957 (Gm15739)
predicted gene 15739 		ENSMUST00000118049 (Gm15739-001) 146248551-146249422 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004MF_0001ENSG00000127870ENST00000346166ENST00000381570ENST00000381588ENST00000468480ENST00000474280ENST00000476347ENST00000498039ENSG00000132964ENST00000381527ENST00000465820ENST00000477277ENST00000477290ENST00000480323ENST00000536792ENSG00000227882ENST00000431978ENSG00000278413ENST00000617467CIL_0004MF_0002ENSMUSG00000029634ENSMUST00000067837ENSMUST00000159074ENSMUST00000161331ENSMUST00000161574ENSMUST00000161725ENSMUST00000161859ENSMUST00000162219ENSMUST00000169407ENSMUSG00000029635ENSMUST00000031640ENSMUST00000159467ENSMUST00000159615ENSMUST00000160924ENSMUST00000161181ENSMUST00000161652ENSMUST00000162494ENSMUSG00000080957ENSMUST00000118049
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004MF_0001ENSG00000127870ENST00000346166ENST00000381570ENST00000381588ENST00000468480ENSG00000132964ENST00000381527ENST00000465820ENST00000477277ENST00000480323ENST00000536792ENSG00000227882ENST00000431978ENSG00000278413ENST00000617467CIL_0004MF_0002ENSMUSG00000029634ENSMUST00000067837ENSMUST00000161574ENSMUST00000161859ENSMUST00000162219ENSMUST00000169407ENSMUSG00000029635ENSMUST00000031640ENSMUST00000159467ENSMUST00000159615ENSMUST00000161181ENSMUST00000162494ENSMUSG00000080957ENSMUST00000118049
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000127870 ENST00000346166 4.831±0.00 6.282±0.00 1.087±0.00 8.514±3.13 4.306±0.00 3.933±0.63 2.514±0.69 4.084±1.77 2.916±0.74 5.449±1.28 2.278±1.50 7.189±3.59 4.039±2.62 13.674±2.33
ENST00000381570 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.829±0.00 N/A N/A 0.475±0.00 5.087±2.04
ENST00000381588 0.857±0.00 2.112±0.00 1.154±0.00 1.807±0.35 2.060±0.12 1.332±0.30 1.542±0.98 1.605±0.00 0.767±0.00 0.970±0.00 1.951±0.00 2.092±0.25 1.835±0.49 N/A
ENST00000468480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.447±0.00 N/A N/A N/A
ENST00000474280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000132964 ENST00000381527 2.049±0.00 1.534±0.00 N/A 1.678±0.53 2.556±1.25 6.531±4.16 2.456±0.00 1.868±1.58 1.744±0.60 1.748±0.00 1.722±0.00 2.826±0.78 2.135±0.28 6.198±0.00
ENST00000465820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.801±0.00 6.280±0.00 10.547±0.00
ENST00000477277 N/A 0.830±0.00 0.542±0.00 N/A N/A N/A N/A N/A 0.511±0.00 1.225±0.00 N/A 1.393±0.00 0.803±0.23 N/A
ENST00000477290 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480323 N/A 0.626±0.00 N/A N/A N/A 0.607±0.00 N/A N/A N/A N/A 0.515±0.00 0.674±0.00 N/A N/A
ENST00000536792 N/A N/A 0.699±0.00 N/A 3.005±0.00 1.248±0.00 1.373±0.00 1.387±0.00 2.496±0.00 2.963±0.00 N/A 5.555±5.21 6.831±0.00 14.237±0.00
ENSG00000227882 ENST00000431978 N/A 0.017±0.00 N/A N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A 0.023±0.01
ENSG00000278413 ENST00000617467 N/A 0.197±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.397±0.00 N/A 0.397±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029634 ENSMUST00000067837 5.834±0.46 N/A 4.461±0.51 13.110±12.35 4.466±1.52 2.436±0.45 2.625±0.58 7.417±2.74 3.141±1.06 2.378±0.22 2.896±0.53 7.964±6.49 11.286±7.82 12.765±9.30
ENSMUST00000159074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161574 N/A 8.593±1.82 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161859 5.729±1.50 8.508±1.63 8.007±1.21 3.182±1.89 4.162±1.05 4.781±1.88 4.253±1.72 9.178±1.27 4.700±1.08 7.363±1.61 6.745±1.12 4.986±2.45 4.306±2.39 8.948±3.00
ENSMUST00000162219 N/A N/A N/A N/A 5.492±0.59 8.130±2.45 N/A N/A N/A N/A N/A 14.244±6.75 N/A 30.560±0.00
ENSMUST00000169407 N/A N/A N/A 7.912±0.00 1.993±0.00 3.146±0.00 N/A 2.840±0.00 3.118±1.15 3.105±0.26 N/A 4.935±2.65 5.408±3.76 N/A
ENSMUSG00000029635 ENSMUST00000031640 1.559±0.00 N/A 10.931±0.00 5.011±1.79 2.568±0.00 N/A 1.457±0.17 N/A 9.065±2.73 N/A 1.413±0.80 4.670±0.45 3.719±0.81 2.115±1.31
ENSMUST00000159467 N/A N/A N/A 31.649±0.00 N/A N/A N/A N/A N/A N/A N/A 71.997±0.00 50.837±16.78 19.586±0.00
ENSMUST00000159615 8.961±5.08 46.831±20.71 12.513±0.00 11.792±3.01 12.094±4.97 19.748±6.80 2.676±0.94 11.514±3.19 12.657±4.40 11.410±4.41 0.744±0.02 17.919±7.73 3.652±0.37 5.340±2.73
ENSMUST00000160924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161181 N/A N/A N/A N/A N/A 9.287±0.17 0.569±0.00 2.980±0.00 4.153±1.32 2.922±0.00 1.562±0.00 9.701±7.95 2.399±0.28 1.291±0.57
ENSMUST00000161652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162494 3.244±1.63 15.319±5.61 5.413±0.00 4.545±2.40 3.944±0.64 16.120±2.53 0.561±0.00 4.156±0.74 5.827±3.02 3.161±0.39 0.881±0.44 11.287±4.32 4.481±1.85 2.107±0.07
ENSMUSG00000080957 ENSMUST00000118049 0.155±0.04 0.333±0.18 0.240±0.09 0.378±0.33 0.261±0.17 0.407±0.19 0.101±0.04 0.306±0.11 0.196±0.11 0.350±0.15 0.032±0.00 0.294±0.20 0.215±0.12 0.118±0.04

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