C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128594 LRRC4 9606 - 7:128027071-128032107 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000249363 LRRC4-001 128027071-128031070 protein_coding
  ENST00000476782 LRRC4-002 128030357-128032107 protein_coding
  ENST00000478726 LRRC4-003 128030489-128031621 protein_coding
  ENST00000494115 LRRC4-004 128030159-128031005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000249363ENST00000476782ENST00000494115
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000249363 0.054±0.00 0.154±0.00 5.224±1.97 N/A 0.049±0.00 0.973±0.00 0.430±0.00 1.585±0.00 1.259±0.25 1.068±0.40 0.998±0.31
ENST00000476782 N/A N/A N/A 0.853±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000494115 N/A N/A N/A N/A 1.249±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OG CIL_0001OG_0001 CGP 7:127610292-128092609
CIL_0004Y2 CIL_0004Y2_0002 CGP 7:127652180-128092609
CIL_0004Y6 CIL_0004Y6_0002 CGP 7:128027071-128257628

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0043197 IEA dendritic spine
GO:0044309 IEA neuron spine
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane
GO:0050807 IEA regulation of synapse organization
GO:0050808 IEA synapse organization
GO:0060076 IEA excitatory synapse
GO:0097119 IEA postsynaptic density protein 95 clustering

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003020 lrrc4.2 leucine rich repeat containing 4.2 protein_coding Danio_rerio
ENSDARG00000069402 lrrc4.1 leucine rich repeat containing 4.1 protein_coding Danio_rerio
ENSMUSG00000049939 Lrrc4 leucine rich repeat containing 4 protein_coding Mus_musculus

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