C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000249363 LRRC4-001 ENSG00000128594 9606 - 7:128027071-128031070 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainHeartKidneyLiverLungOvaryPlacentaTestisENST00000249363
Transcript ID Adipose Adrenal Brain Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000249363 0.054±0.00 0.154±0.00 5.224±1.97 0.049±0.00 0.973±0.00 0.430±0.00 1.585±0.00 1.259±0.25 1.068±0.40 0.998±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001OG CIL_0001OG_0001 CGP 7:127610292-128092609
CIL_0004Y2 CIL_0004Y2_0002 CGP 7:127652180-128092609
CIL_0004Y6 CIL_0004Y6_0002 CGP 7:128027071-128257628

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0043197 IEA dendritic spine
GO:0044309 IEA neuron spine
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane
GO:0050807 IEA regulation of synapse organization
GO:0050808 IEA synapse organization
GO:0060076 IEA excitatory synapse
GO:0097119 IEA postsynaptic density protein 95 clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062304 Lrrc4-001 protein_coding Mus_musculus 0 4013
ENSMUST00000171353 Lrrc4-002 protein_coding Mus_musculus 0 741
ENSDART00000007520 lrrc4.2-001 protein_coding Danio_rerio 5e-26 124
ENSDART00000140028 lrrc4.1-001 protein_coding Danio_rerio 0.00002 57

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