C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004Y6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000003020-ENSDARG00000091085 CGP 7955 18:9756856-10138401
GeneTranscriptPositionBiotype
ENSDARG00000003020 (lrrc4.2)
leucine rich repeat containing 4.2 		ENSDART00000007520 (lrrc4.2-001) 9756856-9758790 protein_coding
ENSDARG00000091085 (lepa)
leptin a 		ENSDART00000126441 (lepa-001) 10137808-10138401 protein_coding
CIL_0004Y6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128594-ENSG00000174697 CGP 9606 7:128027071-128257628
GeneTranscriptPositionBiotype
ENSG00000128594 (LRRC4)
leucine rich repeat containing 4 		ENST00000249363 (LRRC4-001) 128027071-128031070 protein_coding
ENST00000476782 (LRRC4-002) 128030357-128032107 protein_coding
ENST00000478726 (LRRC4-003) 128030489-128031621 protein_coding
ENST00000494115 (LRRC4-004) 128030159-128031005 protein_coding
ENSG00000174697 (LEP)
leptin 		ENST00000308868 (LEP-001) 128241284-128257628 protein_coding
ENSG00000197157 (SND1)
staphylococcal nuclease and tudor domain containing 1 		ENST00000354725 (SND1-001) 127652180-128092607 protein_coding
ENST00000461056 (SND1-002) 127679045-127698937 processed_transcript
ENST00000463020 (SND1-013) 127652194-127687147 retained_intron
ENST00000465900 (SND1-007) 127718658-127929227 processed_transcript
ENST00000467238 (SND1-008) 127990946-127998076 processed_transcript
ENST00000468166 (SND1-006) 127718554-127887949 processed_transcript
ENST00000468621 (SND1-003) 127685941-127701213 processed_transcript
ENST00000470463 (SND1-010) 128042302-128084759 processed_transcript
ENST00000470723 (SND1-009) 127949116-128081412 processed_transcript
ENST00000483503 (SND1-004) 127692487-127703191 processed_transcript
ENST00000484767 (SND1-014) 127904355-128074622 processed_transcript
ENST00000485871 (SND1-012) 128089489-128092207 processed_transcript
ENST00000486037 (SND1-016) 127887912-128084850 protein_coding
ENST00000489417 (SND1-011) 128086471-128092609 retained_intron
ENST00000492772 (SND1-005) 127694692-127703225 processed_transcript
ENST00000492840 (SND1-015) 127904626-127990955 processed_transcript
CIL_0004Y6_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000049939-ENSMUSG00000059201 CGP 10090 6:28661831-29073877
GeneTranscriptPositionBiotype
ENSMUSG00000001424 (Snd1)
staphylococcal nuclease and tudor domain containing 1 		ENSMUST00000001460 (Snd1-001) 28480348-28888832 protein_coding
ENSMUST00000163772 (Snd1-006) 28704909-28707087 processed_transcript
ENSMUST00000164915 (Snd1-002) 28480348-28877723 nonsense_mediated_decay
ENSMUST00000165151 (Snd1-008) 28880043-28886527 retained_intron
ENSMUST00000166136 (Snd1-011) 28848907-28880308 processed_transcript
ENSMUST00000167201 (Snd1-003) 28480359-28935162 protein_coding
ENSMUST00000168362 (Snd1-004) 28475139-28523737 protein_coding
ENSMUST00000169321 (Snd1-007) 28705720-28724981 processed_transcript
ENSMUST00000169579 (Snd1-010) 28776548-28880233 processed_transcript
ENSMUST00000171195 (Snd1-009) 28764690-28874987 processed_transcript
ENSMUST00000171532 (Snd1-005) 28561817-28724971 processed_transcript
ENSMUST00000183161 (Snd1-012) 28480429-28482848 retained_intron
ENSMUSG00000049939 (Lrrc4)
leucine rich repeat containing 4 		ENSMUST00000062304 (Lrrc4-001) 28828133-28831747 protein_coding
ENSMUST00000171353 (Lrrc4-002) 28661831-28830345 protein_coding
ENSMUSG00000059201 (Lep)
leptin 		ENSMUST00000069789 (Lep-001) 29060220-29073877 protein_coding
ENSMUST00000169505 (Lep-002) 29065462-29070972 protein_coding
ENSMUSG00000092090 (Gm3294)
predicted gene 3294 		ENSMUST00000164104 (Gm3294-001) 28981634-29022165 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004Y6_0001ENSDARG00000003020ENSDART00000007520ENSDARG00000091085ENSDART00000126441CIL_0004Y6_0002ENSG00000128594ENST00000249363ENST00000476782ENST00000478726ENST00000494115ENSG00000174697ENST00000308868ENSG00000197157ENST00000354725ENST00000461056ENST00000463020ENST00000465900ENST00000467238ENST00000468166ENST00000468621ENST00000470463ENST00000470723ENST00000483503ENST00000484767ENST00000485871ENST00000486037ENST00000489417ENST00000492772ENST00000492840CIL_0004Y6_0003ENSMUSG00000001424ENSMUST00000001460ENSMUST00000163772ENSMUST00000164915ENSMUST00000165151ENSMUST00000166136ENSMUST00000167201ENSMUST00000168362ENSMUST00000169321ENSMUST00000169579ENSMUST00000171195ENSMUST00000171532ENSMUST00000183161ENSMUSG00000049939ENSMUST00000062304ENSMUST00000171353ENSMUSG00000059201ENSMUST00000069789ENSMUST00000169505ENSMUSG00000092090ENSMUST00000164104
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004Y6_0001ENSDARG00000003020ENSDART00000007520ENSDARG00000091085ENSDART00000126441CIL_0004Y6_0002ENSG00000128594ENST00000249363ENST00000476782ENST00000494115ENSG00000174697ENST00000308868ENSG00000197157ENST00000354725ENST00000465900ENST00000468166ENST00000489417ENST00000492772CIL_0004Y6_0003ENSMUSG00000001424ENSMUST00000001460ENSMUSG00000049939ENSMUST00000062304ENSMUST00000171353ENSMUSG00000059201ENSMUST00000069789ENSMUST00000169505ENSMUSG00000092090ENSMUST00000164104
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003020 ENSDART00000007520 N/A N/A N/A 2.101±1.75 N/A N/A 0.112±0.08 0.094±0.00 0.020±0.00 N/A 0.608±0.00 N/A N/A N/A
ENSDARG00000091085 ENSDART00000126441 N/A N/A N/A 0.227±0.04 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000128594 ENST00000249363 0.054±0.00 0.154±0.00 N/A 5.224±1.97 N/A N/A 0.049±0.00 0.973±0.00 0.430±0.00 1.585±0.00 N/A 1.259±0.25 1.068±0.40 0.998±0.31
ENST00000476782 N/A N/A N/A N/A N/A 0.853±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494115 N/A N/A N/A N/A N/A N/A 1.249±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000174697 ENST00000308868 18.693±0.00 0.257±0.00 N/A 0.045±0.00 180.637±172.66 0.389±0.07 0.676±0.10 0.091±0.00 0.974±0.96 0.180±0.11 0.036±0.00 0.105±0.10 5.835±3.35 0.276±0.16
ENSG00000197157 ENST00000354725 30.479±0.00 14.498±0.00 5.227±0.00 8.925±2.02 30.345±18.68 20.449±10.75 9.665±4.99 26.982±15.02 18.727±11.40 25.313±15.88 31.779±0.00 52.079±29.39 86.032±25.84 30.406±3.57
ENST00000461056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465900 N/A N/A N/A N/A N/A N/A N/A 12.728±0.00 N/A N/A N/A 78.614±0.00 N/A N/A
ENST00000467238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.125±0.00 N/A N/A N/A
ENST00000468621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470463 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.685±0.00 N/A N/A
ENST00000492772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.737±0.00 N/A N/A N/A
ENST00000492840 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001424 ENSMUST00000001460 33.038±8.88 72.672±16.73 25.640±1.38 22.082±6.64 30.831±10.13 27.658±9.41 11.186±3.31 16.896±2.23 33.682±2.46 29.863±4.34 9.615±0.54 63.430±17.27 62.807±19.01 3.438±0.49
ENSMUST00000163772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000165151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171195 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000049939 ENSMUST00000062304 0.815±0.08 3.283±0.33 0.990±0.17 12.509±4.52 0.803±0.29 0.288±0.05 0.287±0.09 0.294±0.07 0.103±0.04 0.549±0.08 0.109±0.04 3.985±1.19 0.893±0.80 1.045±0.45
ENSMUST00000171353 N/A N/A N/A N/A N/A 0.173±0.00 N/A N/A 0.117±0.06 N/A 0.071±0.00 N/A N/A N/A
ENSMUSG00000059201 ENSMUST00000069789 372.090±312.67 9.265±2.65 1.451±0.87 0.008±0.01 69.016±4.53 1.021±0.17 0.814±0.21 1.322±0.57 0.013±0.00 1.749±0.62 0.576±0.54 7.751±1.22 0.455±0.45 0.536±0.13
ENSMUST00000169505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A
ENSMUSG00000092090 ENSMUST00000164104 N/A N/A N/A 0.652±0.64 N/A 0.085±0.01 N/A 0.055±0.00 N/A N/A N/A 0.209±0.00 N/A N/A

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