C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_0001OG_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000106331-ENSG00000197157 | CGP | 9606 | 7:127610292-128092609  |
|
| Gene | Transcript | Position | Biotype | |
ENSG00000106331  (PAX4)paired box 4 |
ENST00000338516 (PAX4-201)
|
127610811-127615928 | protein_coding | |
|
ENST00000341640 (PAX4-001)
|
127610292-127615726 | protein_coding | ||
|
ENST00000378740 (PAX4-004)
|
127610811-127615928 | protein_coding | ||
|
ENST00000463946 (PAX4-002)
|
127610938-127615670 | protein_coding | ||
|
ENST00000477423 (PAX4-005)
|
127611751-127615209 | retained_intron | ||
|
ENST00000483494 (PAX4-003)
|
127610937-127615670 | nonsense_mediated_decay | ||
|
ENST00000611453 (PAX4-202)
|
127611816-127615670 | protein_coding | ||
|
ENSG00000128594 (LRRC4) leucine rich repeat containing 4 |
ENST00000249363 (LRRC4-001)
|
128027071-128031070 | protein_coding | |
|
ENST00000476782 (LRRC4-002)
|
128030357-128032107 | protein_coding | ||
|
ENST00000478726 (LRRC4-003)
|
128030489-128031621 | protein_coding | ||
|
ENST00000494115 (LRRC4-004)
|
128030159-128031005 | protein_coding | ||
|
ENSG00000197157 (SND1) staphylococcal nuclease and tudor domain containing 1 |
ENST00000354725 (SND1-001)
|
127652180-128092607 | protein_coding | |
|
ENST00000461056 (SND1-002)
|
127679045-127698937 | processed_transcript | ||
|
ENST00000463020 (SND1-013)
|
127652194-127687147 | retained_intron | ||
|
ENST00000465900 (SND1-007)
|
127718658-127929227 | processed_transcript | ||
|
ENST00000467238 (SND1-008)
|
127990946-127998076 | processed_transcript | ||
|
ENST00000468166 (SND1-006)
|
127718554-127887949 | processed_transcript | ||
|
ENST00000468621 (SND1-003)
|
127685941-127701213 | processed_transcript | ||
|
ENST00000470463 (SND1-010)
|
128042302-128084759 | processed_transcript | ||
|
ENST00000470723 (SND1-009)
|
127949116-128081412 | processed_transcript | ||
|
ENST00000483503 (SND1-004)
|
127692487-127703191 | processed_transcript | ||
|
ENST00000484767 (SND1-014)
|
127904355-128074622 | processed_transcript | ||
|
ENST00000485871 (SND1-012)
|
128089489-128092207 | processed_transcript | ||
|
ENST00000486037 (SND1-016)
|
127887912-128084850 | protein_coding | ||
|
ENST00000489417 (SND1-011)
|
128086471-128092609 | retained_intron | ||
|
ENST00000492772 (SND1-005)
|
127694692-127703225 | processed_transcript | ||
|
ENST00000492840 (SND1-015)
|
127904626-127990955 | processed_transcript | ||
|
ENSG00000240579 (RP11-20L24.1) |
ENST00000459978 (RP11-20L24.1-001)
|
127857852-127858488 | processed_pseudogene | |
|
ENSG00000240790 (AC073934.6) |
ENST00000490314 (AC073934.6-001)
|
127644685-127652012 | antisense | |
| CIL_0001OG_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000029706-ENSMUSG00000001424 | CGP | 10090 | 6:28442334-28935162 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000001424 (Snd1) staphylococcal nuclease and tudor domain containing 1 |
ENSMUST00000001460 (Snd1-001)
|
28480348-28888832 | protein_coding | |
|
ENSMUST00000163772 (Snd1-006)
|
28704909-28707087 | processed_transcript | ||
|
ENSMUST00000164915 (Snd1-002)
|
28480348-28877723 | nonsense_mediated_decay | ||
|
ENSMUST00000165151 (Snd1-008)
|
28880043-28886527 | retained_intron | ||
|
ENSMUST00000166136 (Snd1-011)
|
28848907-28880308 | processed_transcript | ||
|
ENSMUST00000167201 (Snd1-003)
|
28480359-28935162 | protein_coding | ||
|
ENSMUST00000168362 (Snd1-004)
|
28475139-28523737 | protein_coding | ||
|
ENSMUST00000169321 (Snd1-007)
|
28705720-28724981 | processed_transcript | ||
|
ENSMUST00000169579 (Snd1-010)
|
28776548-28880233 | processed_transcript | ||
|
ENSMUST00000171195 (Snd1-009)
|
28764690-28874987 | processed_transcript | ||
|
ENSMUST00000171532 (Snd1-005)
|
28561817-28724971 | processed_transcript | ||
|
ENSMUST00000183161 (Snd1-012)
|
28480429-28482848 | retained_intron | ||
|
ENSMUSG00000029706 (Pax4) paired box 4 |
ENSMUST00000031718 (Pax4-001)
|
28442334-28449353 | protein_coding | |
|
ENSMUST00000164519 (Pax4-002)
|
28442334-28449251 | protein_coding | ||
|
ENSMUST00000171089 (Pax4-003)
|
28442339-28449251 | protein_coding | ||
|
ENSMUST00000174036 (Pax4-004)
|
28444673-28447180 | retained_intron | ||
|
ENSMUST00000174194 (Pax4-006)
|
28442375-28447180 | protein_coding | ||
|
ENSMUST00000174423 (Pax4-005)
|
28443804-28446864 | retained_intron | ||
|
ENSMUSG00000049939 (Lrrc4) leucine rich repeat containing 4 |
ENSMUST00000062304 (Lrrc4-001)
|
28828133-28831747 | protein_coding | |
|
ENSMUST00000171353 (Lrrc4-002)
|
28661831-28830345 | protein_coding | ||
Expression Patterns
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