C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myosin IB
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128641 MYO1B 9606 + 2:191245185-191425389 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000304164 MYO1B-001 191245528-191425389 protein_coding
  ENST00000339514 MYO1B-003 191245276-191425389 protein_coding
  ENST00000392316 MYO1B-002 191276885-191425389 protein_coding
  ENST00000392318 MYO1B-010 191245389-191425384 protein_coding
  ENST00000418908 MYO1B-011 191245185-191346274 protein_coding
  ENST00000420448 MYO1B-008 191263573-191296226 protein_coding
  ENST00000427152 MYO1B-009 191411065-191416511 protein_coding
  ENST00000438652 MYO1B-012 191246283-191341562 protein_coding
  ENST00000451437 MYO1B-005 191262999-191363873 protein_coding
  ENST00000461714 MYO1B-014 191407658-191409073 retained_intron
  ENST00000471904 MYO1B-007 191263354-191350389 retained_intron
  ENST00000490069 MYO1B-006 191401540-191424037 retained_intron
  ENST00000494129 MYO1B-004 191381004-191388276 retained_intron
  ENST00000496992 MYO1B-013 191377522-191383339 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000304164ENST00000339514ENST00000392316ENST00000392318ENST00000427152
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000304164 N/A N/A N/A 1.146±0.00 2.414±0.00 N/A N/A 15.700±0.00 11.871±0.00 N/A N/A 4.226±3.40 N/A 1.992±0.00
ENST00000339514 12.251±0.00 4.704±0.00 0.620±0.00 0.769±0.00 4.915±0.62 4.126±2.50 1.750±1.28 5.308±2.45 1.871±0.00 14.999±7.18 0.579±0.31 5.385±2.32 4.784±0.21 1.638±0.00
ENST00000392316 10.132±0.00 3.357±0.00 1.503±0.00 N/A 3.979±0.00 3.676±0.00 0.640±0.00 11.799±6.79 1.145±0.00 4.490±0.07 0.739±0.00 3.381±1.66 4.125±0.85 1.865±0.00
ENST00000392318 3.174±0.00 3.057±0.00 0.953±0.00 1.771±0.00 N/A 2.798±0.00 1.153±0.41 6.537±0.00 N/A N/A N/A 4.432±3.24 3.035±2.13 4.716±0.57
ENST00000427152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.393±0.00 27.505±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AM CIL_0009AM_0001 VISTA 2:190761403-191362006

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000146 ISS microfilament motor activity
GO:0003774 IEA motor activity
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA:ISS ATP binding
GO:0005546 ISS phosphatidylinositol-4,5-bisphosphate binding
GO:0005547 ISS phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 ISS cytoplasm
GO:0005769 IDA early endosome
GO:0005884 IDA actin filament
GO:0005886 ISS plasma membrane
GO:0005903 ISS brush border
GO:0006892 IMP post-Golgi vesicle-mediated transport
GO:0007015 IMP actin filament organization
GO:0008152 IEA metabolic process
GO:0010008 IDA endosome membrane
GO:0016459 IEA myosin complex
GO:0030048 ISS actin filament-based movement
GO:0030175 ISS filopodium
GO:0032588 IDA trans-Golgi network membrane
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051015 IMP actin filament binding
GO:0051017 ISS actin filament bundle assembly
GO:0070062 IDA extracellular vesicular exosome
GO:0071944 ISS cell periphery

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024694 myo1b myosin IB protein_coding Danio_rerio
ENSMUSG00000018417 Myo1b myosin IB protein_coding Mus_musculus

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