C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin IB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392318 MYO1B-010 ENSG00000128641 9606 + 2:191245389-191425384 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyOvaryPlacentaTestisENST00000392318
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Ovary Placenta Testis
ENST00000392318 3.174±0.00 3.057±0.00 0.953±0.00 1.771±0.00 2.798±0.00 1.153±0.41 6.537±0.00 4.432±3.24 3.035±2.13 4.716±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AM CIL_0009AM_0001 VISTA 2:190761403-191362006

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000146 ISS microfilament motor activity
GO:0003774 IEA motor activity
GO:0005515 IEA protein binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA:ISS ATP binding
GO:0005546 ISS phosphatidylinositol-4,5-bisphosphate binding
GO:0005547 ISS phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 ISS cytoplasm
GO:0005769 IDA early endosome
GO:0005884 IDA actin filament
GO:0005886 ISS plasma membrane
GO:0005903 ISS brush border
GO:0006892 IMP post-Golgi vesicle-mediated transport
GO:0007015 IMP actin filament organization
GO:0008152 IEA metabolic process
GO:0010008 IDA endosome membrane
GO:0016459 IEA myosin complex
GO:0030048 ISS actin filament-based movement
GO:0030175 ISS filopodium
GO:0032588 IDA trans-Golgi network membrane
GO:0048471 IDA perinuclear region of cytoplasm
GO:0051015 IMP actin filament binding
GO:0051017 ISS actin filament bundle assembly
GO:0070062 IDA extracellular vesicular exosome
GO:0071944 ISS cell periphery

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018561 Myo1b-002 protein_coding Mus_musculus 0 4586
ENSMUST00000046390 Myo1b-001 protein_coding Mus_musculus 0 3062
ENSMUST00000114537 Myo1b-003 protein_coding Mus_musculus 0 2988
ENSMUST00000114541 Myo1b-013 protein_coding Mus_musculus 0 2977
ENSMUST00000144694 Myo1b-006 protein_coding Mus_musculus 0 1134
ENSMUST00000136701 Myo1b-008 processed_transcript Mus_musculus 0 994
ENSMUST00000151525 Myo1b-004 retained_intron Mus_musculus 0 747
ENSMUST00000136273 Myo1b-014 processed_transcript Mus_musculus 0 730
ENSMUST00000135125 Myo1b-007 processed_transcript Mus_musculus 0 407
ENSMUST00000140731 Myo1b-010 processed_transcript Mus_musculus 0 390
ENSMUST00000145367 Myo1b-012 retained_intron Mus_musculus 0 379
ENSMUST00000140930 Myo1b-011 retained_intron Mus_musculus 0 311
ENSMUST00000126952 Myo1b-009 retained_intron Mus_musculus 2.94273e-44 185

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