C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myosin IB
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018417 Myo1b 10090 - 1:51749765-51916071 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018561 Myo1b-002 51749994-51915928 protein_coding
  ENSMUST00000046390 Myo1b-001 51749765-51916071 protein_coding
  ENSMUST00000114537 Myo1b-003 51749982-51915941 protein_coding
  ENSMUST00000114541 Myo1b-013 51749989-51907316 protein_coding
  ENSMUST00000123299 Myo1b-015 51834464-51851106 processed_transcript
  ENSMUST00000126657 Myo1b-005 51862645-51915921 retained_intron
  ENSMUST00000126952 Myo1b-009 51779715-51782204 retained_intron
  ENSMUST00000135125 Myo1b-007 51799536-51820546 processed_transcript
  ENSMUST00000136273 Myo1b-014 51766876-51776436 processed_transcript
  ENSMUST00000136701 Myo1b-008 51776393-51795225 processed_transcript
  ENSMUST00000140731 Myo1b-010 51762522-51770879 processed_transcript
  ENSMUST00000140930 Myo1b-011 51762590-51767392 retained_intron
  ENSMUST00000144694 Myo1b-006 51797403-51896301 protein_coding
  ENSMUST00000145367 Myo1b-012 51760353-51764470 retained_intron
  ENSMUST00000151525 Myo1b-004 51810681-51915912 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018561ENSMUST00000046390ENSMUST00000114537ENSMUST00000114541ENSMUST00000136701
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018561 1.478±0.04 N/A N/A 12.706±2.32 N/A N/A 1.064±0.11 0.685±0.00 1.849±0.40 N/A 0.595±0.20 5.735±4.14 4.588±2.23 0.385±0.13
ENSMUST00000046390 3.288±1.16 4.751±1.25 3.049±1.01 5.480±0.42 2.017±0.81 1.783±0.74 1.375±0.23 1.551±0.32 2.140±0.81 12.724±1.32 0.543±0.16 8.144±3.39 7.397±0.97 0.709±0.13
ENSMUST00000114537 2.766±0.78 8.049±2.14 7.632±1.83 N/A 2.652±0.68 3.861±0.38 1.639±0.29 1.304±0.57 8.987±2.03 22.429±0.87 0.834±0.25 6.148±2.08 16.473±10.50 0.687±0.27
ENSMUST00000114541 N/A N/A N/A N/A 0.762±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136701 N/A 9.257±0.05 N/A N/A 3.624±0.35 5.295±0.64 N/A N/A 17.161±2.22 N/A N/A 14.523±3.54 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000146 ISS microfilament motor activity
GO:0003774 IEA motor activity
GO:0003779 IEA actin binding
GO:0005516 IEA calmodulin binding
GO:0005524 IEA ATP binding
GO:0005546 ISS phosphatidylinositol-4,5-bisphosphate binding
GO:0005547 ISS phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 ISS cytoplasm
GO:0005769 IEA early endosome
GO:0005884 IEA actin filament
GO:0005886 ISS plasma membrane
GO:0005903 ISS brush border
GO:0006892 IEA post-Golgi vesicle-mediated transport
GO:0007015 IEA actin filament organization
GO:0008152 IEA metabolic process
GO:0010008 IEA endosome membrane
GO:0016459 IEA myosin complex
GO:0030048 ISS actin filament-based movement
GO:0030175 ISS filopodium
GO:0032588 IEA trans-Golgi network membrane
GO:0048471 IEA perinuclear region of cytoplasm
GO:0051015 IEA actin filament binding
GO:0051017 ISS actin filament bundle assembly
GO:0070062 IEA extracellular vesicular exosome
GO:0071944 ISS cell periphery

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024694 myo1b myosin IB protein_coding Danio_rerio
ENSG00000128641 MYO1B myosin IB protein_coding Homo_sapiens

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