C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: interactor of little elongator complex ELL subunit 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000128915 ICE2 9606 - 15:60419609-60479160 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261520 ICE2-001 60419609-60479145 protein_coding
  ENST00000558121 ICE2-007 60421476-60443071 retained_intron
  ENST00000558181 ICE2-002 60419613-60479160 nonsense_mediated_decay
  ENST00000558451 ICE2-016 60454688-60455442 retained_intron
  ENST00000558512 ICE2-005 60453712-60478929 protein_coding
  ENST00000558654 ICE2-010 60466673-60479112 processed_transcript
  ENST00000560072 ICE2-015 60466687-60479103 protein_coding
  ENST00000560406 ICE2-014 60468171-60479103 protein_coding
  ENST00000560520 ICE2-009 60468187-60479113 protein_coding
  ENST00000560668 ICE2-008 60456761-60479132 nonsense_mediated_decay
  ENST00000560895 ICE2-012 60455356-60479110 nonsense_mediated_decay
  ENST00000561087 ICE2-013 60456765-60479107 processed_transcript
  ENST00000561114 ICE2-004 60451095-60479073 protein_coding
  ENST00000561124 ICE2-018 60423652-60440668 processed_transcript
  ENST00000561144 ICE2-017 60447491-60448951 retained_intron
  ENST00000561328 ICE2-006 60437820-60453783 retained_intron
  ENST00000561446 ICE2-011 60456666-60479110 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261520ENST00000558121ENST00000558181ENST00000561114ENST00000561124ENST00000561144ENST00000561328
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261520 N/A 0.900±0.00 N/A N/A 0.613±0.00 N/A 0.647±0.00 1.089±0.00 0.362±0.00 1.183±0.00 0.243±0.00 1.713±0.88 1.191±0.78 1.502±0.00
ENST00000558121 2.719±0.00 1.280±0.00 N/A 1.012±0.00 2.700±0.00 2.863±0.00 1.143±0.67 2.512±1.27 0.823±0.00 1.980±0.00 0.989±0.10 2.267±0.96 0.749±0.12 2.861±0.00
ENST00000558181 0.903±0.00 1.449±0.00 N/A 0.462±0.09 0.554±0.00 0.639±0.00 0.182±0.00 N/A 0.475±0.00 N/A 0.303±0.15 1.863±0.30 N/A 1.348±0.00
ENST00000561114 N/A N/A 1.082±0.00 0.431±0.00 0.814±0.00 1.638±0.00 N/A N/A N/A N/A N/A 1.204±0.00 N/A 1.939±0.00
ENST00000561124 N/A 9.296±0.00 N/A N/A N/A N/A N/A N/A N/A 6.292±0.00 N/A N/A N/A N/A
ENST00000561144 N/A N/A N/A 4.156±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561328 N/A N/A 0.364±0.00 N/A N/A 0.739±0.00 0.243±0.00 N/A N/A 1.293±0.00 N/A 0.829±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LQ CIL_0007LQ_0001 UCNEbase 15:59905203-60532122

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0008023 IMP transcription elongation factor complex
GO:0015030 IDA Cajal body
GO:0035327 IDA transcriptionally active chromatin
GO:0035363 IDA histone locus body
GO:0042795 IMP snRNA transcription from RNA polymerase II promoter
GO:0042796 IMP snRNA transcription from RNA polymerase III promoter
GO:0045945 IMP positive regulation of transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086670 narg2 NMDA receptor regulated 2 protein_coding Danio_rerio
ENSMUSG00000032235 Narg2 interactor of little elongation complex ELL subunit 2 protein_coding Mus_musculus

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