C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interactor of little elongator complex ELL subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261520 ICE2-001 ENSG00000128915 9606 - 15:60419609-60479145 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261520
Transcript ID Adrenal Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261520 0.900±0.00 0.613±0.00 0.647±0.00 1.089±0.00 0.362±0.00 1.183±0.00 0.243±0.00 1.713±0.88 1.191±0.78 1.502±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LQ CIL_0007LQ_0001 UCNEbase 15:59905203-60532122

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0008023 IMP transcription elongation factor complex
GO:0015030 IDA Cajal body
GO:0035327 IDA transcriptionally active chromatin
GO:0035363 IDA histone locus body
GO:0042795 IMP snRNA transcription from RNA polymerase II promoter
GO:0042796 IMP snRNA transcription from RNA polymerase III promoter
GO:0045945 IMP positive regulation of transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034761 Narg2-001 protein_coding Mus_musculus 0 1256
ENSMUST00000142743 Narg2-004 retained_intron Mus_musculus 0 907
ENSMUST00000147558 Narg2-010 retained_intron Mus_musculus 0 540
ENSMUST00000146368 Narg2-009 processed_transcript Mus_musculus 0 440
ENSMUST00000117246 Narg2-002 protein_coding Mus_musculus 0 431
ENSMUST00000125938 Narg2-006 protein_coding Mus_musculus 0 348
ENSMUST00000151667 Narg2-005 retained_intron Mus_musculus 0 289
ENSMUST00000145538 Narg2-007 protein_coding Mus_musculus 0 231
ENSMUST00000117610 Narg2-003 protein_coding Mus_musculus 9.80909e-45 187
ENSMUST00000131233 Narg2-008 nonsense_mediated_decay Mus_musculus 4.06377e-44 185
ENSMUST00000029674 Efna4-001 protein_coding Mus_musculus 0.00001 58
ENSMUST00000140795 Abat-002 retained_intron Mus_musculus 0.0005 53

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