C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interactor of little elongator complex ELL subunit 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558181 ICE2-002 ENSG00000128915 9606 - 15:60419613-60479160 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverMuscleOvaryTestisENST00000558181
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Muscle Ovary Testis
ENST00000558181 0.903±0.00 1.449±0.00 0.462±0.09 0.554±0.00 0.639±0.00 0.182±0.00 0.475±0.00 0.303±0.15 1.863±0.30 1.348±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LQ CIL_0007LQ_0001 UCNEbase 15:59905203-60532122

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0008023 IMP transcription elongation factor complex
GO:0015030 IDA Cajal body
GO:0035327 IDA transcriptionally active chromatin
GO:0035363 IDA histone locus body
GO:0042795 IMP snRNA transcription from RNA polymerase II promoter
GO:0042796 IMP snRNA transcription from RNA polymerase III promoter
GO:0045945 IMP positive regulation of transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034761 Narg2-001 protein_coding Mus_musculus 0 1212
ENSMUST00000142743 Narg2-004 retained_intron Mus_musculus 0 1083
ENSMUST00000147558 Narg2-010 retained_intron Mus_musculus 0 540
ENSMUST00000146368 Narg2-009 processed_transcript Mus_musculus 0 440
ENSMUST00000117610 Narg2-003 protein_coding Mus_musculus 0 257
ENSMUST00000151667 Narg2-005 retained_intron Mus_musculus 9.80909e-45 187
ENSMUST00000117246 Narg2-002 protein_coding Mus_musculus 9.80909e-45 187
ENSMUST00000131233 Narg2-008 nonsense_mediated_decay Mus_musculus 4.06377e-44 185
ENSMUST00000125938 Narg2-006 protein_coding Mus_musculus 3e-26 126
ENSMUST00000029674 Efna4-001 protein_coding Mus_musculus 0.00001 58
ENSMUST00000140795 Abat-002 retained_intron Mus_musculus 0.0005 53

Loading