C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: potassium voltage-gated channel, Shaw-related subfamily, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129159 KCNC1 9606 + 11:17734812-17783055 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000265969 KCNC1-002 17734812-17782672 protein_coding
  ENST00000379472 KCNC1-001 17735973-17777830 protein_coding
  ENST00000525802 KCNC1-004 17773551-17779700 processed_transcript
  ENST00000526029 KCNC1-003 17779172-17783055 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000265969ENST00000379472ENST00000525802ENST00000526029
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000265969 N/A N/A 5.626±0.00 0.037±0.01 0.039±0.00 0.021±0.00 N/A N/A N/A 0.045±0.03 N/A N/A
ENST00000379472 0.027±0.00 0.069±0.00 2.300±1.72 0.009±0.00 0.060±0.02 0.006±0.00 0.010±0.00 N/A 0.068±0.00 0.029±0.01 0.071±0.02 1.205±0.32
ENST00000525802 N/A N/A N/A 0.026±0.00 0.065±0.00 N/A N/A N/A 0.392±0.00 N/A N/A N/A
ENST00000526029 N/A N/A 3.689±2.35 N/A N/A N/A N/A 0.022±0.00 N/A N/A 0.065±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000448 CIL_000448_0001 CGP 11:17719568-17783055
CIL_000418 CIL_000418_0002 CGP 11:17734812-18013162

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005249 TAS voltage-gated potassium channel activity
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006811 IEA ion transport
GO:0006813 TAS potassium ion transport
GO:0007268 TAS synaptic transmission
GO:0008076 IEA voltage-gated potassium channel complex
GO:0016020 IEA membrane
GO:0019894 IEA kinesin binding
GO:0030673 IEA axolemma
GO:0032590 IEA dendrite membrane
GO:0032809 IEA neuronal cell body membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0051260 IEA protein homooligomerization
GO:0055085 IEA transmembrane transport
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032959 kcnc1b potassium voltage-gated channel, Shaw-related subfamily, member 1b protein_coding Danio_rerio
ENSDARG00000051852 kcnc1a potassium voltage-gated channel, Shaw-related subfamily, member 1a protein_coding Danio_rerio
ENSMUSG00000058975 Kcnc1 potassium voltage gated channel, Shaw-related subfamily, member 1 protein_coding Mus_musculus

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