C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: potassium voltage gated channel, Shaw-related subfamily, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058975 Kcnc1 10090 + 7:46396497-46438375 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025202 Kcnc1-001 46396497-46433353 protein_coding
  ENSMUST00000160234 Kcnc1-003 46422680-46427800 processed_transcript
  ENSMUST00000160433 Kcnc1-002 46397648-46438375 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025202ENSMUST00000160234ENSMUST00000160433
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025202 0.066±0.06 0.138±0.03 0.091±0.02 4.988±1.77 0.752±0.37 0.166±0.06 0.028±0.01 0.041±0.03 0.004±0.00 0.133±0.02 9.365±1.39 0.032±0.02 0.031±0.04 0.438±0.19
ENSMUST00000160234 0.063±0.00 N/A N/A N/A N/A N/A 0.117±0.04 N/A 0.025±0.00 N/A N/A N/A 0.231±0.00 7.236±1.22
ENSMUST00000160433 0.009±0.00 0.193±0.08 0.041±0.00 10.949±7.40 0.813±0.37 0.204±0.04 N/A 0.028±0.02 0.009±0.01 0.104±0.00 3.003±0.37 0.053±0.03 0.008±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000448 CIL_000448_0002 CGP 7:46376474-46438375
CIL_000418 CIL_000418_0003 CGP 7:46396497-46639807

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0008076 IEA voltage-gated potassium channel complex
GO:0019894 IDA kinesin binding
GO:0030673 IDA axolemma
GO:0032590 IDA dendrite membrane
GO:0032809 IDA neuronal cell body membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0051260 IEA protein homooligomerization
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032959 kcnc1b potassium voltage-gated channel, Shaw-related subfamily, member 1b protein_coding Danio_rerio
ENSDARG00000051852 kcnc1a potassium voltage-gated channel, Shaw-related subfamily, member 1a protein_coding Danio_rerio
ENSG00000129159 KCNC1 potassium voltage-gated channel, Shaw-related subfamily, member 1 protein_coding Homo_sapiens

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