C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, Shaw-related subfamily, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379472 KCNC1-001 ENSG00000129159 9606 + 11:17735973-17777830 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000379472
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000379472 0.027±0.00 0.069±0.00 2.300±1.72 0.009±0.00 0.060±0.02 0.006±0.00 0.010±0.00 0.068±0.00 0.029±0.01 0.071±0.02 1.205±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000448 CIL_000448_0001 CGP 11:17719568-17783055
CIL_000418 CIL_000418_0002 CGP 11:17734812-18013162

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005249 TAS voltage-gated potassium channel activity
GO:0005251 IBA delayed rectifier potassium channel activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0006811 IEA ion transport
GO:0006813 TAS potassium ion transport
GO:0007268 TAS synaptic transmission
GO:0008076 IEA voltage-gated potassium channel complex
GO:0016020 IEA membrane
GO:0034765 IEA regulation of ion transmembrane transport
GO:0051260 IEA protein homooligomerization
GO:0055085 IEA transmembrane transport
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025202 Kcnc1-001 protein_coding Mus_musculus 0 3288
ENSMUST00000160433 Kcnc1-002 protein_coding Mus_musculus 0 2302
ENSDART00000099934 kcnc1a-201 protein_coding Danio_rerio 0 893
ENSMUST00000107906 Kcnc3-002 protein_coding Mus_musculus 0 682
ENSMUST00000107907 Kcnc3-001 protein_coding Mus_musculus 0 682
ENSMUST00000107905 Kcnc3-004 protein_coding Mus_musculus 0 682
ENSMUST00000071062 Kcnc3-003 protein_coding Mus_musculus 0 682
ENSMUST00000160234 Kcnc1-003 processed_transcript Mus_musculus 0 660
ENSDART00000110178 kcnc2-202 protein_coding Danio_rerio 0 496
ENSDART00000149330 kcnc2-002 protein_coding Danio_rerio 0 496
ENSDART00000103356 kcnc2-201 protein_coding Danio_rerio 0 473
ENSDART00000150039 kcnc2-001 protein_coding Danio_rerio 0 473
ENSDART00000087293 kcnc4-201 protein_coding Danio_rerio 0 392
ENSDART00000146805 kcnc4-001 protein_coding Danio_rerio 0 392
ENSMUST00000092175 Kcnc2-201 protein_coding Mus_musculus 0 250

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