C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129295 LRRC6 9606 - 8:132571953-132675617 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000250173 LRRC6-201 132572201-132675559 protein_coding
  ENST00000518101 LRRC6-005 132643380-132675580 processed_transcript
  ENST00000518642 LRRC6-002 132572199-132675559 protein_coding
  ENST00000519085 LRRC6-010 132608405-132622688 protein_coding
  ENST00000519595 LRRC6-001 132572070-132675592 protein_coding
  ENST00000520446 LRRC6-007 132625272-132675592 processed_transcript
  ENST00000521430 LRRC6-003 132638052-132675525 processed_transcript
  ENST00000522584 LRRC6-006 132637985-132675558 nonsense_mediated_decay
  ENST00000522597 LRRC6-008 132572425-132622793 retained_intron
  ENST00000522789 LRRC6-009 132572199-132625387 protein_coding
  ENST00000523503 LRRC6-004 132625312-132675559 processed_transcript
  ENST00000618342 LRRC6-202 132571953-132661667 protein_coding
  ENST00000620350 LRRC6-203 132571953-132675617 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000250173ENST00000518642ENST00000519085ENST00000519595ENST00000520446ENST00000521430ENST00000522584ENST00000522597ENST00000522789ENST00000523503ENST00000618342ENST00000620350
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000250173 N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A N/A 0.205±0.00 N/A N/A
ENST00000518642 N/A N/A 0.497±0.00 0.814±0.33 0.299±0.00 N/A 0.922±0.00 0.071±0.00 0.268±0.00 0.316±0.00 N/A 9.019±0.00
ENST00000519085 0.372±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519595 0.325±0.00 0.365±0.00 1.471±0.00 N/A N/A N/A 0.748±0.00 0.430±0.00 1.179±0.00 1.693±0.00 N/A 17.119±10.46
ENST00000520446 N/A N/A 1.386±0.00 3.463±0.00 1.115±0.00 0.307±0.00 N/A 2.606±0.00 N/A N/A N/A N/A
ENST00000521430 N/A N/A N/A N/A 0.213±0.00 0.346±0.21 N/A N/A N/A N/A N/A N/A
ENST00000522584 N/A N/A N/A N/A N/A N/A N/A N/A 2.327±0.00 0.873±0.00 N/A N/A
ENST00000522597 N/A N/A N/A N/A 1.444±0.00 0.837±0.00 N/A N/A 1.754±0.00 0.677±0.00 N/A N/A
ENST00000522789 N/A 0.272±0.00 N/A 0.538±0.00 0.460±0.00 0.181±0.00 3.389±0.00 0.301±0.00 3.385±0.00 0.882±0.03 0.319±0.08 21.301±0.00
ENST00000523503 N/A N/A N/A 0.601±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618342 N/A N/A N/A N/A 0.157±0.00 N/A N/A 0.127±0.00 0.543±0.00 N/A N/A N/A
ENST00000620350 N/A N/A N/A 0.239±0.00 N/A N/A N/A N/A N/A N/A 0.280±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XM CIL_0000XM_0002 CGP 8:132120859-132675617
CIL_0004ZO CIL_0004ZO_0001 CGP 8:132571953-132760712

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003341 IMP cilium movement
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005929 IDA cilium
GO:0008584 ISS male gonad development
GO:0030317 IMP sperm motility
GO:0036158 IMP outer dynein arm assembly
GO:0036159 IMP inner dynein arm assembly
GO:0044458 IMP motile cilium assembly
GO:0060287 IMP epithelial cilium movement involved in determination of left/right asymmetry
GO:0061458 IMP reproductive system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053318 lrrc6 leucine rich repeat containing 6 protein_coding Danio_rerio
ENSMUSG00000022375 Lrrc6 leucine rich repeat containing 6 (testis) protein_coding Mus_musculus

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