C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000XM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060085-ENSDARG00000053318 CGP 7955 2:43102630-43225067
GeneTranscriptPositionBiotype
ENSDARG00000053318 (lrrc6)
leucine rich repeat containing 6 		ENSDART00000075347 (lrrc6-201) 43199690-43224956 protein_coding
ENSDART00000132346 (lrrc6-001) 43199355-43225067 protein_coding
ENSDARG00000060085 (kcnq3)
potassium voltage-gated channel, KQT-like subfamily, member 3 		ENSDART00000084303 (kcnq3-201) 43115527-43184867 protein_coding
ENSDART00000136141 (kcnq3-002) 43102630-43111514 protein_coding
ENSDART00000145494 (kcnq3-001) 43118413-43184873 protein_coding
CIL_0000XM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000184156-ENSG00000129295 CGP 9606 8:132120859-132675617
GeneTranscriptPositionBiotype
ENSG00000129295 (LRRC6)
leucine rich repeat containing 6 		ENST00000250173 (LRRC6-201) 132572201-132675559 protein_coding
ENST00000518101 (LRRC6-005) 132643380-132675580 processed_transcript
ENST00000518642 (LRRC6-002) 132572199-132675559 protein_coding
ENST00000519085 (LRRC6-010) 132608405-132622688 protein_coding
ENST00000519595 (LRRC6-001) 132572070-132675592 protein_coding
ENST00000520446 (LRRC6-007) 132625272-132675592 processed_transcript
ENST00000521430 (LRRC6-003) 132638052-132675525 processed_transcript
ENST00000522584 (LRRC6-006) 132637985-132675558 nonsense_mediated_decay
ENST00000522597 (LRRC6-008) 132572425-132622793 retained_intron
ENST00000522789 (LRRC6-009) 132572199-132625387 protein_coding
ENST00000523503 (LRRC6-004) 132625312-132675559 processed_transcript
ENST00000618342 (LRRC6-202) 132571953-132661667 protein_coding
ENST00000620350 (LRRC6-203) 132571953-132675617 protein_coding
ENSG00000184156 (KCNQ3)
potassium voltage-gated channel, KQT-like subfamily, member 3 		ENST00000388996 (KCNQ3-001) 132120861-132480953 protein_coding
ENST00000519445 (KCNQ3-002) 132129090-132480578 protein_coding
ENST00000519589 (KCNQ3-003) 132129145-132480310 retained_intron
ENST00000521134 (KCNQ3-004) 132128981-132447262 protein_coding
ENST00000621976 (KCNQ3-201) 132120859-132187213 protein_coding
ENSG00000253521 (HPYR1)
Helicobacter pylori responsive 1 (non-protein coding) 		ENST00000520457 (HPYR1-001) 132560498-132561479 lincRNA
CIL_0000XM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000056258-ENSMUSG00000022375 CGP 10090 15:65986387-66500910
GeneTranscriptPositionBiotype
ENSMUSG00000022375 (Lrrc6)
leucine rich repeat containing 6 (testis) 		ENSMUST00000023006 (Lrrc6-001) 66379858-66500910 protein_coding
ENSMUSG00000056258 (Kcnq3)
potassium voltage-gated channel, subfamily Q, member 3 		ENSMUST00000070256 (Kcnq3-001) 65986387-66286224 protein_coding
ENSMUST00000183354 (Kcnq3-003) 66025116-66103254 processed_transcript
ENSMUST00000183633 (Kcnq3-002) 66283073-66286051 retained_intron
ENSMUSG00000099013 (Gm27153)
predicted gene 27153 		ENSMUST00000184492 (Gm27153-001) 66074552-66091807 antisense
ENSMUSG00000099054 (Gm27242)
predicted gene 27242 		ENSMUST00000184211 (Gm27242-001) 66286917-66290243 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XM_0001ENSDARG00000053318ENSDART00000075347ENSDART00000132346ENSDARG00000060085ENSDART00000084303ENSDART00000136141ENSDART00000145494CIL_0000XM_0002ENSG00000129295ENST00000250173ENST00000518101ENST00000518642ENST00000519085ENST00000519595ENST00000520446ENST00000521430ENST00000522584ENST00000522597ENST00000522789ENST00000523503ENST00000618342ENST00000620350ENSG00000184156ENST00000388996ENST00000519445ENST00000519589ENST00000521134ENST00000621976ENSG00000253521ENST00000520457CIL_0000XM_0003ENSMUSG00000022375ENSMUST00000023006ENSMUSG00000056258ENSMUST00000070256ENSMUST00000183354ENSMUST00000183633ENSMUSG00000099013ENSMUST00000184492ENSMUSG00000099054ENSMUST00000184211
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000XM_0001ENSDARG00000053318ENSDART00000075347ENSDART00000132346ENSDARG00000060085ENSDART00000084303ENSDART00000136141ENSDART00000145494CIL_0000XM_0002ENSG00000129295ENST00000250173ENST00000518642ENST00000519085ENST00000519595ENST00000520446ENST00000521430ENST00000522584ENST00000522597ENST00000522789ENST00000523503ENST00000618342ENST00000620350ENSG00000184156ENST00000388996ENST00000519445ENST00000521134ENST00000621976ENSG00000253521ENST00000520457CIL_0000XM_0003ENSMUSG00000022375ENSMUST00000023006ENSMUSG00000056258ENSMUST00000070256ENSMUST00000183354ENSMUST00000183633ENSMUSG00000099013ENSMUST00000184492ENSMUSG00000099054ENSMUST00000184211
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000053318 ENSDART00000075347 N/A N/A N/A 0.500±0.00 N/A N/A 0.145±0.12 N/A N/A N/A 0.262±0.00 N/A N/A N/A
ENSDART00000132346 N/A N/A N/A 0.830±0.00 N/A N/A 0.086±0.00 2.245±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000060085 ENSDART00000084303 N/A N/A N/A 0.599±0.46 N/A N/A 0.032±0.01 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136141 N/A N/A N/A 0.504±0.42 N/A N/A 0.066±0.03 N/A N/A N/A 0.048±0.00 N/A N/A N/A
ENSDART00000145494 N/A N/A N/A 2.520±1.55 N/A N/A N/A 0.054±0.00 N/A N/A 0.169±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129295 ENST00000250173 N/A N/A N/A N/A N/A N/A 0.152±0.00 N/A N/A N/A N/A 0.205±0.00 N/A N/A
ENST00000518101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518642 N/A N/A 0.497±0.00 N/A 0.814±0.33 0.299±0.00 N/A 0.922±0.00 0.071±0.00 0.268±0.00 N/A 0.316±0.00 N/A 9.019±0.00
ENST00000519085 0.372±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519595 0.325±0.00 0.365±0.00 1.471±0.00 N/A N/A N/A N/A 0.748±0.00 0.430±0.00 1.179±0.00 N/A 1.693±0.00 N/A 17.119±10.46
ENST00000520446 N/A N/A 1.386±0.00 N/A 3.463±0.00 1.115±0.00 0.307±0.00 N/A 2.606±0.00 N/A N/A N/A N/A N/A
ENST00000521430 N/A N/A N/A N/A N/A 0.213±0.00 0.346±0.21 N/A N/A N/A N/A N/A N/A N/A
ENST00000522584 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.327±0.00 N/A 0.873±0.00 N/A N/A
ENST00000522597 N/A N/A N/A N/A N/A 1.444±0.00 0.837±0.00 N/A N/A 1.754±0.00 N/A 0.677±0.00 N/A N/A
ENST00000522789 N/A 0.272±0.00 N/A N/A 0.538±0.00 0.460±0.00 0.181±0.00 3.389±0.00 0.301±0.00 3.385±0.00 N/A 0.882±0.03 0.319±0.08 21.301±0.00
ENST00000523503 N/A N/A N/A N/A 0.601±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618342 N/A N/A N/A N/A N/A 0.157±0.00 N/A N/A 0.127±0.00 0.543±0.00 N/A N/A N/A N/A
ENST00000620350 N/A N/A N/A N/A 0.239±0.00 N/A N/A N/A N/A N/A N/A N/A 0.280±0.00 N/A
ENSG00000184156 ENST00000388996 0.063±0.00 N/A N/A 3.770±0.69 N/A N/A 0.069±0.00 0.115±0.00 0.013±0.00 0.362±0.00 N/A N/A N/A 0.044±0.00
ENST00000519445 N/A N/A N/A N/A N/A N/A N/A N/A 0.112±0.00 N/A N/A N/A 0.068±0.00 0.030±0.00
ENST00000519589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521134 N/A N/A 0.092±0.00 N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000621976 0.181±0.00 N/A 0.074±0.00 2.942±0.00 N/A 0.052±0.00 0.032±0.02 0.025±0.00 0.027±0.02 N/A N/A 0.060±0.02 0.024±0.01 N/A
ENSG00000253521 ENST00000520457 N/A N/A N/A 0.044±0.00 N/A N/A 0.072±0.00 0.080±0.00 N/A N/A N/A N/A N/A 0.091±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022375 ENSMUST00000023006 0.019±0.00 0.113±0.01 0.050±0.01 0.580±0.60 N/A N/A 0.028±0.01 N/A 0.028±0.01 0.597±0.17 0.014±0.00 0.856±0.54 0.008±0.00 31.734±27.98
ENSMUSG00000056258 ENSMUST00000070256 0.034±0.00 0.258±0.09 0.031±0.00 3.775±0.19 0.017±0.01 0.145±0.01 0.020±0.00 0.074±0.02 0.006±0.00 0.009±0.01 0.012±0.00 0.143±0.06 0.021±0.01 0.338±0.17
ENSMUST00000183354 N/A N/A N/A N/A 0.166±0.01 N/A N/A N/A N/A 0.057±0.00 N/A 0.333±0.00 N/A N/A
ENSMUST00000183633 N/A N/A 0.018±0.00 N/A N/A 0.092±0.00 N/A N/A 0.009±0.00 N/A N/A 0.086±0.00 0.017±0.00 0.424±0.23
ENSMUSG00000099013 ENSMUST00000184492 N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.04 N/A N/A N/A N/A 0.148±0.00
ENSMUSG00000099054 ENSMUST00000184211 N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A 0.056±0.01 N/A N/A N/A 0.027±0.01

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