C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cyclin T1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129315 CCNT1 9606 - 12:48688458-48716998 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261900 CCNT1-001 48688464-48716898 protein_coding
  ENST00000417344 CCNT1-004 48693033-48716675 nonsense_mediated_decay
  ENST00000550457 CCNT1-002 48705624-48714520 retained_intron
  ENST00000551989 CCNT1-003 48693930-48695977 retained_intron
  ENST00000618666 CCNT1-201 48688458-48716998 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261900ENST00000417344ENST00000551989ENST00000618666
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261900 1.504±0.00 0.763±0.00 N/A 2.375±0.26 1.909±0.00 2.160±0.16 1.791±0.53 2.956±0.84 1.017±0.02 2.642±0.00 3.882±0.00 1.921±1.11 0.908±0.05 4.507±0.11
ENST00000417344 N/A N/A 1.049±0.00 N/A 1.518±0.00 2.953±0.00 0.769±0.00 N/A 3.482±0.00 2.055±0.00 0.831±0.00 2.854±0.00 N/A 5.142±0.00
ENST00000551989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.583±0.00
ENST00000618666 1.265±0.00 N/A N/A 0.611±0.00 N/A N/A N/A N/A N/A N/A 1.202±0.00 1.352±0.42 0.416±0.00 0.986±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068F CIL_00068F_0001 CGP 12:48653401-48716998

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0003677 IDA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006468 IPI protein phosphorylation
GO:0007049 IEA cell cycle
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008024 IDA positive transcription elongation factor complex b
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0017069 IEA snRNA binding
GO:0019901 IEA protein kinase binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0050434 TAS positive regulation of viral transcription
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017525 ccnt1 cyclin T1 protein_coding Danio_rerio
ENSMUSG00000011960 Ccnt1 cyclin T1 protein_coding Mus_musculus

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