C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cyclin T1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417344 CCNT1-004 ENSG00000129315 9606 - 12:48693033-48716675 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartLiverLungMuscleOvaryTestisENST00000417344
Transcript ID Bladder Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000417344 1.049±0.00 1.518±0.00 2.953±0.00 0.769±0.00 3.482±0.00 2.055±0.00 0.831±0.00 2.854±0.00 5.142±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00068F CIL_00068F_0001 CGP 12:48653401-48716998

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 IEA regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0006468 IPI protein phosphorylation
GO:0007049 IEA cell cycle
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008024 IDA positive transcription elongation factor complex b
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0019901 IEA protein kinase binding
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0050434 TAS positive regulation of viral transcription
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000168928 Ccnt1-003 nonsense_mediated_decay Mus_musculus 0 2148
ENSMUST00000012104 Ccnt1-201 protein_coding Mus_musculus 0 1493
ENSMUST00000169707 Ccnt1-001 protein_coding Mus_musculus 0 1493
ENSMUST00000164565 Ccnt1-008 retained_intron Mus_musculus 0 547
ENSMUST00000164294 Ccnt1-006 retained_intron Mus_musculus 0 460
ENSMUST00000130921 Ccnt1-002 retained_intron Mus_musculus 0 418
ENSMUST00000170452 Ccnt1-007 retained_intron Mus_musculus 0 246

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