C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: interleukin enhancer binding factor 3, 90kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129351 ILF3 9606 + 19:10654261-10692417 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000250241 ILF3-003 10670537-10685765 protein_coding
  ENST00000407004 ILF3-001 10654328-10685765 protein_coding
  ENST00000449870 ILF3-201 10654261-10692417 protein_coding
  ENST00000585835 ILF3-020 10671481-10682115 nonsense_mediated_decay
  ENST00000586544 ILF3-012 10687605-10692398 processed_transcript
  ENST00000587505 ILF3-025 10670512-10681028 nonsense_mediated_decay
  ENST00000587840 ILF3-026 10671037-10681306 nonsense_mediated_decay
  ENST00000587928 ILF3-008 10654304-10689847 retained_intron
  ENST00000587941 ILF3-017 10670815-10671501 protein_coding
  ENST00000588657 ILF3-006 10670606-10689312 protein_coding
  ENST00000589052 ILF3-024 10670516-10679170 nonsense_mediated_decay
  ENST00000589173 ILF3-021 10679185-10681556 retained_intron
  ENST00000589283 ILF3-015 10654938-10671423 protein_coding
  ENST00000589416 ILF3-019 10671170-10681311 nonsense_mediated_decay
  ENST00000589485 ILF3-018 10677205-10681314 nonsense_mediated_decay
  ENST00000589600 ILF3-016 10654382-10677236 protein_coding
  ENST00000589998 ILF3-002 10654361-10684761 protein_coding
  ENST00000590009 ILF3-014 10655024-10679831 protein_coding
  ENST00000590261 ILF3-005 10670606-10689846 protein_coding
  ENST00000590869 ILF3-023 10683756-10689492 protein_coding
  ENST00000591649 ILF3-011 10685928-10689847 retained_intron
  ENST00000592763 ILF3-004 10670606-10685765 protein_coding
  ENST00000593061 ILF3-022 10683518-10685163 protein_coding
  ENST00000593199 ILF3-013 10655496-10671203 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000407004ENST00000449870ENST00000586544ENST00000587928ENST00000588657ENST00000589485ENST00000589998ENST00000590261ENST00000590869
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000407004 14.321±0.00 29.938±0.00 1.362±0.00 7.679±6.13 9.384±4.54 7.813±5.65 6.460±4.95 8.897±5.77 2.992±1.07 5.827±4.51 7.969±0.00 24.648±14.75 17.245±4.29 21.291±5.48
ENST00000449870 15.942±0.00 12.826±0.00 1.773±0.00 N/A 9.671±0.00 9.795±7.60 7.304±6.61 13.105±0.00 3.626±1.25 2.646±0.00 N/A 24.086±9.98 8.572±0.58 17.589±0.00
ENST00000586544 N/A N/A N/A 2.107±0.00 N/A 3.038±0.00 N/A 10.001±0.00 N/A 10.952±0.00 2.229±0.00 16.505±0.00 10.434±0.00 N/A
ENST00000587928 N/A N/A 1.987±0.00 N/A N/A 1.810±0.00 N/A N/A 1.876±0.00 N/A N/A 5.646±3.91 N/A 17.321±0.00
ENST00000588657 N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.810±0.00 17.510±0.00 N/A N/A N/A
ENST00000589485 N/A N/A N/A N/A N/A N/A N/A 10.355±0.00 N/A N/A N/A N/A N/A N/A
ENST00000589998 14.637±0.00 N/A N/A 1.808±0.00 N/A N/A 1.389±0.00 N/A 2.054±0.00 N/A 1.953±0.00 N/A N/A N/A
ENST00000590261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.212±0.00 19.372±0.77 12.215±2.55 34.167±8.59
ENST00000590869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 136.151±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000492 CIL_000492_0001 CGP 19:10602457-10692417
CIL_0002S9 CIL_0002S9_0001 CGP 19:10654261-10713437

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003723 NAS RNA binding
GO:0003725 IDA double-stranded RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006351 IEA transcription, DNA-templated
GO:0006468 IDA protein phosphorylation
GO:0016020 IDA membrane
GO:0017148 ISS negative regulation of translation
GO:0030529 IDA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding
GO:0045071 ISS negative regulation of viral genome replication
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000029394 ilf3b interleukin enhancer binding factor 3b protein_coding Danio_rerio
ENSMUSG00000032178 Ilf3 interleukin enhancer binding factor 3 protein_coding Mus_musculus

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