C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000492_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000129353-ENSG00000129351 CGP 9606 19:10602457-10692417
GeneTranscriptPositionBiotype
ENSG00000129353 (SLC44A2)
solute carrier family 44 (choline transporter), member 2 		ENST00000335757 (SLC44A2-004) 10625258-10644559 protein_coding
ENST00000407327 (SLC44A2-002) 10602510-10644550 protein_coding
ENST00000586078 (SLC44A2-003) 10625525-10644557 protein_coding
ENST00000586549 (SLC44A2-007) 10637744-10644130 protein_coding
ENST00000588214 (SLC44A2-014) 10636926-10642385 processed_transcript
ENST00000588393 (SLC44A2-013) 10631706-10637702 retained_intron
ENST00000588409 (SLC44A2-012) 10625594-10635234 nonsense_mediated_decay
ENST00000588465 (SLC44A2-001) 10602457-10636496 retained_intron
ENST00000588688 (SLC44A2-009) 10625520-10631721 protein_coding
ENST00000589561 (SLC44A2-006) 10635804-10644555 retained_intron
ENST00000590382 (SLC44A2-008) 10602457-10631918 protein_coding
ENST00000590475 (SLC44A2-015) 10642336-10643398 retained_intron
ENST00000590857 (SLC44A2-010) 10625520-10631704 protein_coding
ENST00000591194 (SLC44A2-016) 10637644-10643528 protein_coding
ENST00000592293 (SLC44A2-011) 10625594-10632156 nonsense_mediated_decay
ENSG00000267100 (ILF3-AS1)
ILF3 antisense RNA 1 (head to head) 		ENST00000591501 (ILF3-AS1-001) 10651862-10653844 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_000492_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000057193-ENSMUSG00000032178 CGP 10090 9:21337828-21405361
GeneTranscriptPositionBiotype
ENSMUSG00000032178 (Ilf3)
interleukin enhancer binding factor 3 		ENSMUST00000067646 (Ilf3-201) 21368019-21405361 protein_coding
ENSMUST00000115414 (Ilf3-202) 21368019-21401803 protein_coding
ENSMUSG00000057193 (Slc44a2)
solute carrier family 44, member 2 		ENSMUST00000034697 (Slc44a2-201) 21337828-21355025 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000492_0001ENSG00000129353ENST00000335757ENST00000407327ENST00000586078ENST00000586549ENST00000588214ENST00000588393ENST00000588409ENST00000588465ENST00000588688ENST00000589561ENST00000590382ENST00000590475ENST00000590857ENST00000591194ENST00000592293ENSG00000267100ENST00000591501CIL_000492_0002ENSMUSG00000032178ENSMUST00000067646ENSMUST00000115414ENSMUSG00000057193ENSMUST00000034697
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000492_0001ENSG00000129353ENST00000335757ENST00000407327ENST00000586078ENST00000586549ENST00000588214ENST00000588393ENST00000588409ENST00000589561ENST00000590857ENST00000591194ENSG00000267100ENST00000591501CIL_000492_0002ENSMUSG00000032178ENSMUST00000067646ENSMUST00000115414ENSMUSG00000057193ENSMUST00000034697
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129353 ENST00000335757 N/A N/A N/A N/A N/A 1.870±0.00 N/A N/A N/A N/A N/A 6.993±4.92 N/A N/A
ENST00000407327 61.912±0.00 80.793±0.00 5.884±0.00 17.833±11.97 18.873±13.50 18.569±13.79 11.010±10.24 33.474±30.31 6.709±2.99 42.491±33.54 13.171±7.48 15.946±9.34 146.127±68.61 42.767±0.00
ENST00000586078 N/A N/A 1.543±0.00 9.934±7.64 1.584±0.00 10.813±0.00 4.405±2.47 11.475±0.00 2.291±0.00 N/A 10.774±0.00 N/A N/A 8.412±0.00
ENST00000586549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.262±0.00 17.001±0.00 35.854±0.00 45.680±0.00
ENST00000588214 N/A N/A N/A N/A N/A N/A 3.126±0.00 N/A N/A 13.309±0.00 N/A N/A N/A N/A
ENST00000588393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.234±0.00 76.705±0.00 68.508±0.00
ENST00000588409 N/A N/A 12.764±0.00 N/A 13.952±0.00 N/A N/A N/A 11.029±0.00 N/A N/A 17.371±9.35 73.213±0.00 N/A
ENST00000588465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589561 N/A 27.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.262±0.00
ENST00000590382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590857 N/A N/A N/A N/A N/A 13.576±0.00 N/A N/A N/A 15.053±0.00 N/A N/A N/A N/A
ENST00000591194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.330±0.00 92.310±0.00 N/A
ENST00000592293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267100 ENST00000591501 8.817±0.00 11.450±0.00 4.325±0.00 9.380±3.76 4.890±3.28 5.474±3.88 3.268±2.18 4.727±3.10 2.228±0.28 7.453±5.74 6.504±1.85 7.004±5.70 4.335±0.87 7.887±1.11
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032178 ENSMUST00000067646 8.910±5.45 7.955±2.85 9.102±0.06 24.136±5.40 5.851±3.42 5.780±2.23 4.292±0.93 6.390±1.76 5.971±4.84 8.444±2.83 3.428±1.11 21.460±7.98 12.032±2.85 20.015±3.57
ENSMUST00000115414 4.363±1.81 2.539±0.00 4.109±0.00 11.098±7.40 2.574±0.45 1.740±0.18 1.946±0.41 1.604±0.09 2.424±1.83 2.824±0.00 1.300±0.38 13.145±4.14 7.377±2.72 6.584±0.52
ENSMUSG00000057193 ENSMUST00000034697 17.223±4.38 13.964±3.53 47.805±4.96 12.574±0.65 24.274±7.89 9.729±1.34 24.222±3.30 14.086±2.14 4.768±2.42 72.924±10.55 49.202±3.83 19.203±6.30 19.029±13.18 10.662±0.34

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