C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin V
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000129990 SYT5 9606 - 19:55171199-55180441 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354308 SYT5-001 55171223-55180441 protein_coding
  ENST00000537500 SYT5-002 55173096-55180104 protein_coding
  ENST00000585461 SYT5-006 55175287-55179390 nonsense_mediated_decay
  ENST00000587067 SYT5-010 55173640-55175031 protein_coding
  ENST00000588305 SYT5-008 55173595-55176257 retained_intron
  ENST00000589172 SYT5-005 55175785-55180034 protein_coding
  ENST00000590851 SYT5-003 55171199-55179390 protein_coding
  ENST00000590859 SYT5-011 55173640-55174566 protein_coding
  ENST00000592470 SYT5-004 55175793-55180276 protein_coding
  ENST00000592935 SYT5-012 55171687-55173093 processed_transcript
  ENST00000592956 SYT5-009 55173598-55175344 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354308ENST00000537500ENST00000585461ENST00000587067ENST00000590851ENST00000592956
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354308 0.144±0.00 0.172±0.00 N/A 2.136±0.00 0.122±0.00 0.253±0.00 0.046±0.00 0.126±0.00 0.024±0.00 0.088±0.00 0.042±0.00 0.052±0.00 N/A N/A
ENST00000537500 N/A N/A N/A 11.745±8.70 N/A 0.490±0.00 N/A N/A N/A N/A N/A 0.405±0.50 0.055±0.00 0.756±0.00
ENST00000585461 N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.464±0.33 0.077±0.00 8.398±0.00
ENST00000590851 N/A N/A 0.020±0.00 1.323±0.00 N/A 0.040±0.00 0.075±0.00 0.020±0.00 N/A N/A N/A 0.180±0.16 0.022±0.02 1.581±0.00
ENST00000592956 N/A N/A N/A N/A N/A 0.888±0.00 N/A N/A N/A N/A N/A N/A 0.103±0.00 2.082±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OX CIL_0003OX_0001 CGP 19:55158661-55180441
CIL_0004TB CIL_0004TB_0001 CGP 19:55171199-55209506

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005515 IEA protein binding
GO:0005544 IEA calcium-dependent phospholipid binding
GO:0005768 IEA endosome
GO:0006112 TAS energy reserve metabolic process
GO:0007268 TAS synaptic transmission
GO:0008021 IEA synaptic vesicle
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0017156 IEA calcium ion-dependent exocytosis
GO:0019905 IEA syntaxin binding
GO:0030054 IEA cell junction
GO:0030276 IEA clathrin binding
GO:0031045 IEA dense core granule
GO:0043005 IEA neuron projection
GO:0043025 IEA neuronal cell body
GO:0044281 TAS small molecule metabolic process
GO:0046872 IEA metal ion binding
GO:0046982 IEA protein heterodimerization activity
GO:0048471 IEA perinuclear region of cytoplasm
GO:0050796 TAS regulation of insulin secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011640 syt5b synaptotagmin Vb protein_coding Danio_rerio
ENSDARG00000037941 syt5a synaptotagmin Va protein_coding Danio_rerio
ENSMUSG00000004961 Syt5 synaptotagmin V protein_coding Mus_musculus

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