C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004TB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000129990-ENSG00000080031 CGP 9606 19:55171199-55209506
GeneTranscriptPositionBiotype
ENSG00000080031 (PTPRH)
protein tyrosine phosphatase, receptor type, H 		ENST00000263434 (PTPRH-002) 55181248-55209456 protein_coding
ENST00000376350 (PTPRH-001) 55181248-55209456 protein_coding
ENST00000586310 (PTPRH-008) 55205392-55207239 processed_transcript
ENST00000586852 (PTPRH-007) 55203992-55207254 processed_transcript
ENST00000587662 (PTPRH-004) 55205502-55209500 processed_transcript
ENST00000588370 (PTPRH-005) 55205404-55207270 processed_transcript
ENST00000588559 (PTPRH-003) 55194014-55209506 processed_transcript
ENSG00000129990 (SYT5)
synaptotagmin V 		ENST00000354308 (SYT5-001) 55171223-55180441 protein_coding
ENST00000537500 (SYT5-002) 55173096-55180104 protein_coding
ENST00000585461 (SYT5-006) 55175287-55179390 nonsense_mediated_decay
ENST00000587067 (SYT5-010) 55173640-55175031 protein_coding
ENST00000588305 (SYT5-008) 55173595-55176257 retained_intron
ENST00000589172 (SYT5-005) 55175785-55180034 protein_coding
ENST00000590851 (SYT5-003) 55171199-55179390 protein_coding
ENST00000590859 (SYT5-011) 55173640-55174566 protein_coding
ENST00000592470 (SYT5-004) 55175793-55180276 protein_coding
ENST00000592935 (SYT5-012) 55171687-55173093 processed_transcript
ENST00000592956 (SYT5-009) 55173598-55175344 retained_intron
ENSG00000267577 (CTD-2587H24.5)
 ENST00000591665 (CTD-2587H24.5-001) 55158939-55177540 antisense
CIL_0004TB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000004961-ENSMUSG00000035429 CGP 10090 7:4539768-4604041
GeneTranscriptPositionBiotype
ENSMUSG00000004961 (Syt5)
synaptotagmin V 		ENSMUST00000065957 (Syt5-201) 4539768-4546567 protein_coding
ENSMUSG00000035429 (Ptprh)
protein tyrosine phosphatase, receptor type, H 		ENSMUST00000049113 (Ptprh-201) 4548612-4603141 protein_coding
ENSMUST00000166650 (Ptprh-202) 4548614-4604041 protein_coding
ENSMUSG00000077138 (Gm23577)
predicted gene, 23577 		ENSMUST00000103950 (Gm23577-201) 4580069-4580178 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TB_0001ENSG00000080031ENST00000263434ENST00000376350ENST00000586310ENST00000586852ENST00000587662ENST00000588370ENST00000588559ENSG00000129990ENST00000354308ENST00000537500ENST00000585461ENST00000587067ENST00000588305ENST00000589172ENST00000590851ENST00000590859ENST00000592470ENST00000592935ENST00000592956ENSG00000267577ENST00000591665CIL_0004TB_0002ENSMUSG00000004961ENSMUST00000065957ENSMUSG00000035429ENSMUST00000049113ENSMUST00000166650ENSMUSG00000077138ENSMUST00000103950
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004TB_0001ENSG00000080031ENST00000263434ENST00000376350ENST00000586310ENST00000586852ENST00000587662ENST00000588370ENST00000588559ENSG00000129990ENST00000354308ENST00000537500ENST00000585461ENST00000587067ENST00000590851ENST00000592956ENSG00000267577ENST00000591665CIL_0004TB_0002ENSMUSG00000004961ENSMUST00000065957ENSMUSG00000035429ENSMUST00000049113ENSMUST00000166650ENSMUSG00000077138ENSMUST00000103950
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000080031 ENST00000263434 0.157±0.00 0.035±0.00 N/A N/A 0.113±0.00 0.817±0.00 N/A 0.096±0.00 0.957±0.00 0.077±0.00 0.057±0.00 0.770±0.47 N/A N/A
ENST00000376350 0.022±0.00 N/A N/A 0.867±0.00 N/A 0.670±0.02 0.135±0.00 N/A N/A N/A N/A 0.377±0.00 0.082±0.03 0.165±0.00
ENST00000586310 N/A N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586852 0.118±0.00 N/A N/A N/A N/A N/A 0.082±0.00 N/A N/A N/A N/A N/A 0.214±0.00 N/A
ENST00000587662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.00 N/A
ENST00000588370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.642±0.00 N/A N/A
ENST00000588559 N/A 0.095±0.00 N/A N/A N/A N/A 0.058±0.00 0.029±0.00 0.035±0.00 0.089±0.00 N/A N/A 0.056±0.01 N/A
ENSG00000129990 ENST00000354308 0.144±0.00 0.172±0.00 N/A 2.136±0.00 0.122±0.00 0.253±0.00 0.046±0.00 0.126±0.00 0.024±0.00 0.088±0.00 0.042±0.00 0.052±0.00 N/A N/A
ENST00000537500 N/A N/A N/A 11.745±8.70 N/A 0.490±0.00 N/A N/A N/A N/A N/A 0.405±0.50 0.055±0.00 0.756±0.00
ENST00000585461 N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.464±0.33 0.077±0.00 8.398±0.00
ENST00000588305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590851 N/A N/A 0.020±0.00 1.323±0.00 N/A 0.040±0.00 0.075±0.00 0.020±0.00 N/A N/A N/A 0.180±0.16 0.022±0.02 1.581±0.00
ENST00000590859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592956 N/A N/A N/A N/A N/A 0.888±0.00 N/A N/A N/A N/A N/A N/A 0.103±0.00 2.082±0.00
ENSG00000267577 ENST00000591665 N/A 0.142±0.00 N/A 0.375±0.00 0.084±0.00 0.088±0.00 N/A 1.229±0.00 0.024±0.00 3.673±0.00 N/A 1.030±1.15 0.196±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004961 ENSMUST00000065957 0.103±0.06 1.136±0.17 0.181±0.00 16.821±5.12 0.071±0.02 1.379±0.73 0.137±0.02 0.136±0.07 0.042±0.02 2.052±0.45 N/A 0.842±0.24 0.063±0.04 0.399±0.25
ENSMUSG00000035429 ENSMUST00000049113 0.064±0.06 0.016±0.00 0.005±0.00 N/A 0.018±0.01 28.655±3.82 0.021±0.01 0.081±0.04 0.015±0.01 0.074±0.00 0.012±0.00 0.106±0.05 0.029±0.01 0.242±0.07
ENSMUST00000166650 0.007±0.00 N/A N/A N/A N/A 2.987±0.14 N/A 0.071±0.01 0.006±0.00 0.034±0.00 N/A 0.084±0.03 0.102±0.00 0.248±0.08
ENSMUSG00000077138 ENSMUST00000103950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1461.800±0.00

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