C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003OX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167646-ENSG00000129990 CGP 9606 19:55158661-55180441
GeneTranscriptPositionBiotype
ENSG00000129990 (SYT5)
synaptotagmin V 		ENST00000354308 (SYT5-001) 55171223-55180441 protein_coding
ENST00000537500 (SYT5-002) 55173096-55180104 protein_coding
ENST00000585461 (SYT5-006) 55175287-55179390 nonsense_mediated_decay
ENST00000587067 (SYT5-010) 55173640-55175031 protein_coding
ENST00000588305 (SYT5-008) 55173595-55176257 retained_intron
ENST00000589172 (SYT5-005) 55175785-55180034 protein_coding
ENST00000590851 (SYT5-003) 55171199-55179390 protein_coding
ENST00000590859 (SYT5-011) 55173640-55174566 protein_coding
ENST00000592470 (SYT5-004) 55175793-55180276 protein_coding
ENST00000592935 (SYT5-012) 55171687-55173093 processed_transcript
ENST00000592956 (SYT5-009) 55173598-55175344 retained_intron
ENSG00000167646 (DNAAF3)
dynein, axonemal, assembly factor 3 		ENST00000391720 (DNAAF3-002) 55158663-55166651 protein_coding
ENST00000455045 (DNAAF3-201) 55158661-55166722 protein_coding
ENST00000524407 (DNAAF3-003) 55158663-55166552 protein_coding
ENST00000526003 (DNAAF3-015) 55162133-55166576 protein_coding
ENST00000526959 (DNAAF3-010) 55161127-55162349 retained_intron
ENST00000527166 (DNAAF3-007) 55161334-55162818 processed_transcript
ENST00000527223 (DNAAF3-001) 55158663-55166650 protein_coding
ENST00000527292 (DNAAF3-008) 55161010-55162807 processed_transcript
ENST00000528412 (DNAAF3-006) 55158663-55166621 nonsense_mediated_decay
ENST00000528476 (DNAAF3-011) 55165817-55166722 processed_transcript
ENST00000532817 (DNAAF3-014) 55162242-55166640 protein_coding
ENST00000533527 (DNAAF3-005) 55158663-55162067 retained_intron
ENST00000534170 (DNAAF3-013) 55162222-55166576 protein_coding
ENST00000534214 (DNAAF3-012) 55162262-55166576 nonsense_mediated_decay
ENST00000586877 (DNAAF3-017) 55165989-55166640 retained_intron
ENST00000587789 (DNAAF3-009) 55158753-55160659 processed_transcript
ENST00000588076 (DNAAF3-020) 55158794-55160689 protein_coding
ENSG00000267110 (CTD-2587H24.4)
 ENST00000587871 (CTD-2587H24.4-001) 55154757-55160671 nonsense_mediated_decay
ENSG00000267577 (CTD-2587H24.5)
 ENST00000591665 (CTD-2587H24.5-001) 55158939-55177540 antisense
CIL_0003OX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000055809-ENSMUSG00000004961 CGP 10090 7:4522933-4546567
GeneTranscriptPositionBiotype
ENSMUSG00000004961 (Syt5)
synaptotagmin V 		ENSMUST00000065957 (Syt5-201) 4539768-4546567 protein_coding
ENSMUSG00000035458 (Tnni3)
troponin I, cardiac 3 		ENSMUST00000098859 (Tnni3-001) 4518305-4522528 protein_coding
ENSMUST00000126873 (Tnni3-007) 4518308-4520567 retained_intron
ENSMUST00000127736 (Tnni3-005) 4521042-4521984 retained_intron
ENSMUST00000132621 (Tnni3-006) 4518305-4519764 retained_intron
ENSMUST00000140424 (Tnni3-002) 4520438-4522794 protein_coding
ENSMUST00000150166 (Tnni3-003) 4521341-4522492 retained_intron
ENSMUST00000151844 (Tnni3-004) 4521899-4522442 processed_transcript
ENSMUST00000154913 (Tnni3-008) 4520477-4524229 protein_coding
ENSMUSG00000055809 (Dnaaf3)
dynein, axonemal assembly factor 3 		ENSMUST00000094897 (Dnaaf3-001) 4522933-4532453 protein_coding
ENSMUSG00000085725 (Gm15873)
predicted gene 15873 		ENSMUST00000123390 (Gm15873-001) 4526536-4528184 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003OX_0001ENSG00000129990ENST00000354308ENST00000537500ENST00000585461ENST00000587067ENST00000588305ENST00000589172ENST00000590851ENST00000590859ENST00000592470ENST00000592935ENST00000592956ENSG00000167646ENST00000391720ENST00000455045ENST00000524407ENST00000526003ENST00000526959ENST00000527166ENST00000527223ENST00000527292ENST00000528412ENST00000528476ENST00000532817ENST00000533527ENST00000534170ENST00000534214ENST00000586877ENST00000587789ENST00000588076ENSG00000267110ENST00000587871ENSG00000267577ENST00000591665CIL_0003OX_0002ENSMUSG00000004961ENSMUST00000065957ENSMUSG00000035458ENSMUST00000098859ENSMUST00000126873ENSMUST00000127736ENSMUST00000132621ENSMUST00000140424ENSMUST00000150166ENSMUST00000151844ENSMUST00000154913ENSMUSG00000055809ENSMUST00000094897ENSMUSG00000085725ENSMUST00000123390
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003OX_0001ENSG00000129990ENST00000354308ENST00000537500ENST00000585461ENST00000587067ENST00000590851ENST00000592956ENSG00000167646ENST00000391720ENST00000524407ENST00000526003ENST00000527166ENST00000527223ENST00000528412ENST00000532817ENST00000533527ENST00000534214ENST00000587789ENST00000588076ENSG00000267110ENST00000587871ENSG00000267577ENST00000591665CIL_0003OX_0002ENSMUSG00000004961ENSMUST00000065957ENSMUSG00000035458ENSMUST00000098859ENSMUST00000126873ENSMUST00000127736ENSMUST00000140424ENSMUST00000150166ENSMUST00000151844ENSMUST00000154913ENSMUSG00000055809ENSMUST00000094897ENSMUSG00000085725ENSMUST00000123390
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129990 ENST00000354308 0.144±0.00 0.172±0.00 N/A 2.136±0.00 0.122±0.00 0.253±0.00 0.046±0.00 0.126±0.00 0.024±0.00 0.088±0.00 0.042±0.00 0.052±0.00 N/A N/A
ENST00000537500 N/A N/A N/A 11.745±8.70 N/A 0.490±0.00 N/A N/A N/A N/A N/A 0.405±0.50 0.055±0.00 0.756±0.00
ENST00000585461 N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.464±0.33 0.077±0.00 8.398±0.00
ENST00000588305 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590851 N/A N/A 0.020±0.00 1.323±0.00 N/A 0.040±0.00 0.075±0.00 0.020±0.00 N/A N/A N/A 0.180±0.16 0.022±0.02 1.581±0.00
ENST00000590859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592956 N/A N/A N/A N/A N/A 0.888±0.00 N/A N/A N/A N/A N/A N/A 0.103±0.00 2.082±0.00
ENSG00000167646 ENST00000391720 N/A 0.160±0.00 N/A N/A N/A N/A N/A 0.561±0.00 N/A 1.912±0.00 N/A 3.915±0.00 N/A 16.541±0.00
ENST00000455045 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524407 0.031±0.00 N/A N/A N/A N/A N/A N/A 0.655±0.00 N/A 3.072±0.00 N/A N/A N/A N/A
ENST00000526003 N/A N/A 0.145±0.00 N/A 0.263±0.00 N/A N/A N/A 0.115±0.00 0.951±0.00 N/A 0.434±0.00 N/A N/A
ENST00000526959 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527166 N/A N/A N/A N/A N/A 0.144±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527223 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.731±0.00 N/A N/A N/A 10.964±0.00
ENST00000527292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528412 N/A N/A N/A N/A N/A N/A N/A 0.428±0.00 N/A N/A N/A N/A N/A N/A
ENST00000528476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.452±0.00 N/A 57.851±0.00
ENST00000533527 N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534214 0.032±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587789 N/A N/A N/A N/A 0.158±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588076 N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A 0.397±0.00 N/A N/A
ENSG00000267110 ENST00000587871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 53.682±0.00
ENSG00000267577 ENST00000591665 N/A 0.142±0.00 N/A 0.375±0.00 0.084±0.00 0.088±0.00 N/A 1.229±0.00 0.024±0.00 3.673±0.00 N/A 1.030±1.15 0.196±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004961 ENSMUST00000065957 0.103±0.06 1.136±0.17 0.181±0.00 16.821±5.12 0.071±0.02 1.379±0.73 0.137±0.02 0.136±0.07 0.042±0.02 2.052±0.45 N/A 0.842±0.24 0.063±0.04 0.399±0.25
ENSMUSG00000035458 ENSMUST00000098859 N/A 1.120±0.20 N/A N/A N/A N/A 1673.690±236.45 0.718±0.25 0.161±0.03 30.812±4.98 0.283±0.18 36.165±51.00 0.868±0.17 32.815±0.00
ENSMUST00000126873 N/A N/A N/A 1.041±0.00 N/A N/A N/A N/A N/A N/A 0.374±0.16 54.662±6.87 0.798±0.27 N/A
ENSMUST00000127736 N/A N/A N/A N/A N/A N/A N/A N/A 0.812±0.00 N/A N/A N/A N/A N/A
ENSMUST00000132621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140424 N/A 1.854±0.05 N/A N/A N/A N/A N/A 1.069±0.00 0.414±0.09 125.320±50.19 N/A 86.361±18.12 0.832±0.00 N/A
ENSMUST00000150166 N/A 1.475±0.07 N/A N/A N/A 1.048±0.00 N/A N/A N/A N/A N/A 17.432±2.58 0.454±0.00 N/A
ENSMUST00000151844 N/A N/A N/A N/A N/A N/A N/A N/A 0.727±0.41 N/A 0.318±0.04 108.670±18.93 N/A N/A
ENSMUST00000154913 N/A N/A N/A N/A N/A N/A 4435.370±1718.43 0.851±0.27 N/A 92.623±17.88 0.145±0.00 20.797±4.21 N/A N/A
ENSMUSG00000055809 ENSMUST00000094897 1.832±0.16 1.048±0.25 N/A 0.925±0.59 4.670±0.95 1.219±0.12 N/A 0.479±0.16 0.166±0.08 7.882±0.65 0.131±0.06 6.663±0.97 0.659±0.36 55.560±24.25
ENSMUSG00000085725 ENSMUST00000123390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A 40.376±0.00

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