C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen beta(1-O)galactosyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130309 COLGALT1 9606 + 19:17555594-17583162 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000252599 COLGALT1-001 17555594-17583159 protein_coding
  ENST00000593832 COLGALT1-004 17579951-17583162 retained_intron
  ENST00000597075 COLGALT1-008 17577075-17580870 retained_intron
  ENST00000597147 COLGALT1-007 17568613-17580806 protein_coding
  ENST00000600474 COLGALT1-005 17556561-17568577 protein_coding
  ENST00000601354 COLGALT1-006 17566033-17571924 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252599ENST00000593832ENST00000597147
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252599 49.806±0.00 24.603±0.00 0.235±0.00 2.116±1.21 12.729±8.35 10.246±6.97 5.660±4.41 4.682±3.02 4.696±1.51 13.308±8.63 7.648±7.23 22.338±8.84 38.523±2.95 13.539±5.82
ENST00000593832 N/A 13.929±0.00 0.804±0.00 1.754±0.82 2.510±1.27 3.216±1.54 0.190±0.00 0.613±0.00 1.506±0.00 5.518±0.00 N/A 7.177±0.00 N/A 3.971±0.27
ENST00000597147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.568±0.00 31.772±0.00 12.685±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076B CIL_00076B_0001 CGP 19:17523301-17583162
CIL_00076A CIL_00076A_0001 CGP 19:17555594-17688365

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005788 IDA endoplasmic reticulum lumen
GO:0009103 IEA lipopolysaccharide biosynthetic process
GO:0016020 IDA membrane
GO:0030198 TAS extracellular matrix organization
GO:0050211 IEA procollagen galactosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058270 COLGALT1 (1 of 3) collagen beta(1-O)galactosyltransferase 1 protein_coding Danio_rerio
ENSDARG00000073974 colgalt1 collagen beta(1-O)galactosyltransferase 1 protein_coding Danio_rerio
ENSDARG00000078276 COLGALT1 (3 of 3) collagen beta(1-O)galactosyltransferase 1 protein_coding Danio_rerio
ENSMUSG00000034807 Colgalt1 collagen beta(1-O)galactosyltransferase 1 protein_coding Mus_musculus

Loading