C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen beta(1-O)galactosyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252599 COLGALT1-001 ENSG00000130309 9606 + 19:17555594-17583159 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252599
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252599 49.806±0.00 24.603±0.00 0.235±0.00 2.116±1.21 12.729±8.35 10.246±6.97 5.660±4.41 4.682±3.02 4.696±1.51 13.308±8.63 7.648±7.23 22.338±8.84 38.523±2.95 13.539±5.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00076B CIL_00076B_0001 CGP 19:17523301-17583162
CIL_00076A CIL_00076A_0001 CGP 19:17555594-17688365

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005788 IDA endoplasmic reticulum lumen
GO:0009103 IEA lipopolysaccharide biosynthetic process
GO:0016020 IDA membrane
GO:0030198 TAS extracellular matrix organization
GO:0050211 IEA procollagen galactosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047903 Colgalt1-201 protein_coding Mus_musculus 0 2043

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