C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin related protein 2/3 complex, subunit 1B, 41kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130429 ARPC1B 9606 + 7:99374249-99394801 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000252725 ARPC1B-001 99374675-99394801 protein_coding
  ENST00000414376 ARPC1B-008 99374259-99388175 protein_coding
  ENST00000417330 ARPC1B-014 99374730-99388261 protein_coding
  ENST00000418347 ARPC1B-013 99374729-99388117 protein_coding
  ENST00000427217 ARPC1B-016 99374730-99388267 protein_coding
  ENST00000429246 ARPC1B-009 99374730-99385778 protein_coding
  ENST00000431816 ARPC1B-015 99374730-99388267 protein_coding
  ENST00000432343 ARPC1B-024 99385700-99391027 nonsense_mediated_decay
  ENST00000443222 ARPC1B-007 99374249-99388195 protein_coding
  ENST00000445924 ARPC1B-018 99385700-99391006 nonsense_mediated_decay
  ENST00000451682 ARPC1B-003 99374730-99394776 protein_coding
  ENST00000455009 ARPC1B-012 99374707-99388255 protein_coding
  ENST00000458033 ARPC1B-017 99374730-99388267 protein_coding
  ENST00000463078 ARPC1B-022 99394042-99394801 processed_transcript
  ENST00000468337 ARPC1B-021 99389094-99389983 retained_intron
  ENST00000474880 ARPC1B-020 99385700-99388956 processed_transcript
  ENST00000481997 ARPC1B-005 99390872-99394794 retained_intron
  ENST00000484375 ARPC1B-025 99374707-99391100 retained_intron
  ENST00000484600 ARPC1B-011 99374730-99390029 retained_intron
  ENST00000491294 ARPC1B-006 99391178-99394797 retained_intron
  ENST00000493403 ARPC1B-019 99386369-99388243 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaENST00000252725ENST00000481997
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000252725 118.980±0.00 263.619±0.00 74.214±0.00 70.688±0.00 91.755±0.00 45.074±0.00 76.297±60.05 142.672±0.00 195.612±21.92
ENST00000481997 N/A N/A N/A N/A N/A N/A N/A N/A 218.307±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005L5 CIL_0005L5_0002 CGP 7:99325898-99394801
CIL_0004TJ CIL_0004TJ_0001 CGP 7:99374249-99408829

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005885 IDA:IEA Arp2/3 protein complex
GO:0005925 IDA focal adhesion
GO:0006928 TAS cellular component movement
GO:0015629 TAS:IEA actin cytoskeleton
GO:0030833 IEA regulation of actin filament polymerization
GO:0034314 IDA:IEA Arp2/3 complex-mediated actin nucleation
GO:0051015 IDA actin filament binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027063 arpc1b actin related protein 2/3 complex, subunit 1B protein_coding Danio_rerio
ENSMUSG00000029622 Arpc1b actin related protein 2/3 complex, subunit 1B protein_coding Mus_musculus

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