C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin related protein 2/3 complex, subunit 1B, 41kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000252725 ARPC1B-001 ENSG00000130429 9606 + 7:99374675-99394801 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaENST00000252725
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000252725 118.980±0.00 263.619±0.00 74.214±0.00 70.688±0.00 91.755±0.00 45.074±0.00 76.297±60.05 142.672±0.00 195.612±21.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005L5 CIL_0005L5_0002 CGP 7:99325898-99394801
CIL_0004TJ CIL_0004TJ_0001 CGP 7:99374249-99408829

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005885 IDA:IEA Arp2/3 protein complex
GO:0005925 IDA focal adhesion
GO:0006928 TAS cellular component movement
GO:0015629 TAS:IEA actin cytoskeleton
GO:0030833 IEA regulation of actin filament polymerization
GO:0034314 IDA:IEA Arp2/3 complex-mediated actin nucleation
GO:0051015 IDA actin filament binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085679 Arpc1b-001 protein_coding Mus_musculus 0 1537
ENSMUST00000153890 Gm5637-001 processed_pseudogene Mus_musculus 0 1336
ENSMUST00000138900 Arpc1b-005 processed_transcript Mus_musculus 0 623
ENSMUST00000126343 Arpc1b-004 retained_intron Mus_musculus 0 606
ENSMUST00000136074 Arpc1b-006 protein_coding Mus_musculus 0 492
ENSMUST00000129033 Arpc1b-003 processed_transcript Mus_musculus 0 333
ENSMUST00000138922 Arpc1b-010 protein_coding Mus_musculus 0 281
ENSMUST00000138235 Arpc1b-007 retained_intron Mus_musculus 0 279
ENSMUST00000128229 Arpc1b-008 retained_intron Mus_musculus 0 267
ENSMUST00000141602 Arpc1b-002 protein_coding Mus_musculus 0 261

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