C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin related protein 2/3 complex, subunit 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029622 Arpc1b 10090 + 5:145114215-145130705 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000085679 Arpc1b-001 145114215-145129699 protein_coding
  ENSMUST00000126343 Arpc1b-004 145114301-145124255 retained_intron
  ENSMUST00000128229 Arpc1b-008 145125891-145127330 retained_intron
  ENSMUST00000129033 Arpc1b-003 145114258-145122795 processed_transcript
  ENSMUST00000136074 Arpc1b-006 145123679-145126786 protein_coding
  ENSMUST00000138235 Arpc1b-007 145123974-145125706 retained_intron
  ENSMUST00000138900 Arpc1b-005 145123974-145126932 processed_transcript
  ENSMUST00000138922 Arpc1b-010 145126758-145130705 protein_coding
  ENSMUST00000141602 Arpc1b-002 145114316-145122635 protein_coding
  ENSMUST00000144375 Arpc1b-009 145127223-145128088 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085679ENSMUST00000126343ENSMUST00000129033ENSMUST00000138235ENSMUST00000138900ENSMUST00000144375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085679 48.368±4.28 N/A 15.615±0.00 6.356±0.21 42.771±15.84 53.514±0.00 2.836±0.83 8.872±3.35 14.639±4.97 29.975±16.67 3.029±0.69 27.796±15.71 27.866±4.02 6.311±1.92
ENSMUST00000126343 58.594±6.65 N/A N/A N/A 21.503±0.00 N/A 13.215±0.00 19.743±0.00 50.313±0.00 N/A N/A 78.454±24.41 152.826±70.68 N/A
ENSMUST00000129033 183.520±0.00 238.625±0.00 N/A N/A N/A N/A N/A N/A 50.431±0.00 144.549±0.00 N/A 275.070±51.56 N/A N/A
ENSMUST00000138235 N/A N/A N/A N/A 13.079±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138900 56.262±1.13 N/A N/A N/A 34.097±20.41 N/A N/A 18.529±0.00 N/A N/A N/A 40.337±0.00 108.575±38.23 13.678±0.00
ENSMUST00000144375 N/A N/A N/A N/A 18.431±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005L5 CIL_0005L5_0003 CGP 5:145083830-145130705
CIL_0004TJ CIL_0004TJ_0002 CGP 5:145114215-145140238

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005737 IEA cytoplasm
GO:0005885 TAS Arp2/3 protein complex
GO:0005925 IEA focal adhesion
GO:0030833 IEA regulation of actin filament polymerization
GO:0051015 IEA actin filament binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027063 arpc1b actin related protein 2/3 complex, subunit 1B protein_coding Danio_rerio
ENSG00000130429 ARPC1B actin related protein 2/3 complex, subunit 1B, 41kDa protein_coding Homo_sapiens

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