C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lymphocyte-specific protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130592 LSP1 9606 + 11:1852970-1892267 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311604 LSP1-004 1852970-1892263 protein_coding
  ENST00000381775 LSP1-001 1865165-1892263 protein_coding
  ENST00000405957 LSP1-005 1868673-1892263 protein_coding
  ENST00000406638 LSP1-002 1870244-1892263 protein_coding
  ENST00000417766 LSP1-008 1870886-1886866 protein_coding
  ENST00000418975 LSP1-016 1870244-1881552 protein_coding
  ENST00000421485 LSP1-013 1863246-1883428 protein_coding
  ENST00000429923 LSP1-015 1870150-1884009 protein_coding
  ENST00000432093 LSP1-010 1876477-1886866 protein_coding
  ENST00000446808 LSP1-014 1864172-1883997 protein_coding
  ENST00000451814 LSP1-006 1869144-1883442 protein_coding
  ENST00000457279 LSP1-007 1869642-1886866 protein_coding
  ENST00000464670 LSP1-012 1886732-1887345 retained_intron
  ENST00000472974 LSP1-009 1871352-1887576 processed_transcript
  ENST00000484895 LSP1-011 1884388-1887502 retained_intron
  ENST00000485341 LSP1-003 1880677-1892267 processed_transcript
  ENST00000612798 LSP1-201 1870252-1892263 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311604ENST00000381775ENST00000405957ENST00000406638ENST00000417766ENST00000429923ENST00000432093ENST00000446808ENST00000451814ENST00000472974ENST00000485341
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311604 14.005±0.00 33.802±0.00 0.502±0.00 1.312±1.10 7.791±4.91 2.456±0.00 1.523±0.00 1.462±0.44 1.302±0.85 10.377±3.04 N/A 3.735±2.94 21.591±0.37 N/A
ENST00000381775 N/A N/A N/A N/A N/A N/A N/A 0.577±0.00 N/A N/A N/A N/A N/A N/A
ENST00000405957 N/A N/A N/A N/A 6.537±0.00 3.611±0.00 2.121±0.00 N/A 1.532±0.00 N/A 1.451±0.00 2.300±0.00 12.727±4.45 3.847±2.21
ENST00000406638 N/A N/A N/A N/A N/A 0.506±0.00 N/A N/A N/A N/A 0.614±0.00 N/A N/A 0.879±0.00
ENST00000417766 N/A N/A N/A 1.586±0.00 N/A N/A 0.461±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000429923 N/A N/A N/A 0.340±0.00 3.727±0.00 4.087±0.00 0.717±0.00 2.636±0.00 N/A N/A 4.244±0.00 N/A 10.621±0.00 N/A
ENST00000432093 N/A N/A N/A N/A N/A N/A N/A N/A 3.653±0.00 N/A N/A 0.863±0.00 N/A N/A
ENST00000446808 N/A N/A N/A N/A N/A N/A N/A N/A 4.875±0.00 N/A N/A N/A N/A N/A
ENST00000451814 N/A N/A N/A N/A N/A N/A N/A N/A 1.350±0.00 N/A N/A N/A N/A N/A
ENST00000472974 N/A N/A N/A N/A 2.202±0.00 N/A N/A 1.213±0.00 N/A N/A 3.249±0.00 4.260±0.00 5.079±0.00 2.792±0.00
ENST00000485341 N/A N/A N/A N/A N/A 0.725±0.00 0.436±0.00 N/A N/A N/A N/A 0.919±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0001 VISTA 11:1663842-2266142
CIL_0007RG CIL_0007RG_0001 VISTA 11:1668349-2271510
CIL_00097V CIL_00097V_0001 VISTA 11:1688064-2293510
CIL_0005ML CIL_0005ML_0002 CGP 11:1838989-1892267
CIL_0005NK CIL_0005NK_0002 CGP 11:1852970-1892267

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 TAS actin binding
GO:0004871 IEA signal transducer activity
GO:0005886 IEA plasma membrane
GO:0006928 TAS cellular component movement
GO:0006935 IEA chemotaxis
GO:0006952 IEA defense response
GO:0006968 TAS cellular defense response
GO:0007165 IEA signal transduction
GO:0015629 TAS actin cytoskeleton
GO:0016020 IDA membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027310 LSP1 lymphocyte-specific protein 1 protein_coding Danio_rerio
ENSMUSG00000018819 Lsp1 lymphocyte specific 1 protein_coding Mus_musculus

Loading