C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lymphocyte specific 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018819 Lsp1 10090 + 7:142460809-142494867 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018963 Lsp1-001 142460846-142494867 protein_coding
  ENSMUST00000038946 Lsp1-005 142471843-142494599 protein_coding
  ENSMUST00000105966 Lsp1-004 142472151-142494600 protein_coding
  ENSMUST00000105967 Lsp1-002 142460864-142494603 protein_coding
  ENSMUST00000105968 Lsp1-012 142460809-142494867 protein_coding
  ENSMUST00000126149 Lsp1-010 142489017-142490422 retained_intron
  ENSMUST00000128986 Lsp1-006 142471872-142488371 retained_intron
  ENSMUST00000132956 Lsp1-007 142474994-142486504 processed_transcript
  ENSMUST00000140626 Lsp1-008 142483259-142489983 processed_transcript
  ENSMUST00000142408 Lsp1-011 142489813-142494517 retained_intron
  ENSMUST00000149521 Lsp1-003 142477013-142494867 processed_transcript
  ENSMUST00000156960 Lsp1-009 142483404-142486480 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018963ENSMUST00000038946ENSMUST00000105966ENSMUST00000105967ENSMUST00000105968ENSMUST00000126149ENSMUST00000132956ENSMUST00000140626ENSMUST00000142408ENSMUST00000149521
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018963 26.887±14.99 2.549±0.29 N/A N/A 28.406±4.43 11.410±0.35 N/A 2.391±1.00 4.261±2.60 17.880±4.05 5.422±1.66 18.256±0.15 N/A 0.271±0.11
ENSMUST00000038946 55.788±39.56 N/A 89.441±12.43 0.789±0.05 N/A 10.365±1.05 N/A N/A 2.178±0.00 N/A N/A 13.650±5.97 3.026±0.00 0.528±0.00
ENSMUST00000105966 65.833±46.01 N/A 41.147±0.00 0.587±0.00 N/A 9.450±0.00 N/A N/A N/A N/A 3.387±0.42 14.812±6.13 2.486±0.37 0.432±0.03
ENSMUST00000105967 N/A 4.274±0.79 N/A 0.771±0.20 44.615±7.84 11.602±1.84 15.315±0.79 5.865±2.79 4.516±3.79 25.897±1.78 4.772±2.69 17.332±4.71 6.464±3.85 0.665±0.42
ENSMUST00000105968 N/A N/A N/A 0.206±0.00 N/A N/A N/A 2.083±1.01 0.899±0.56 N/A 2.131±0.00 N/A 12.003±0.00 N/A
ENSMUST00000126149 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 25.692±0.00 N/A
ENSMUST00000132956 N/A 3.811±0.00 N/A N/A N/A 13.758±0.00 N/A N/A N/A N/A N/A N/A N/A 0.937±0.32
ENSMUST00000140626 N/A N/A N/A 1.777±0.00 N/A N/A N/A N/A 0.530±0.00 N/A N/A 34.606±0.00 9.162±0.00 1.211±0.00
ENSMUST00000142408 107.435±64.23 4.765±0.92 N/A N/A 72.681±14.85 29.859±3.74 N/A 5.156±0.42 1.896±1.91 28.447±3.20 12.157±1.41 54.716±22.10 39.898±39.96 2.472±0.00
ENSMUST00000149521 N/A N/A N/A 1.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MR CIL_0008MR_0002 VISTA 7:142247512-142849546
CIL_0007RG CIL_0007RG_0002 VISTA 7:142251566-142854813
CIL_00097V CIL_00097V_0002 VISTA 7:142268912-142873912
CIL_0005ML CIL_0005ML_0003 CGP 7:142441808-142494867
CIL_0005NK CIL_0005NK_0003 CGP 7:142460809-142506771

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 TAS actin binding
GO:0004871 IEA signal transducer activity
GO:0005886 IEA plasma membrane
GO:0006915 TAS apoptotic process
GO:0006935 IMP chemotaxis
GO:0006952 IMP defense response
GO:0007010 TAS cytoskeleton organization
GO:0007165 IEA signal transduction
GO:0016020 IEA membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027310 LSP1 lymphocyte-specific protein 1 protein_coding Danio_rerio
ENSG00000130592 LSP1 lymphocyte-specific protein 1 protein_coding Homo_sapiens

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