C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000130699 TAF4 9606 - 20:61953469-62065810 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000252996 TAF4-001 61974798-62065810 protein_coding
  ENST00000436129 TAF4-009 61975357-62008187 retained_intron
  ENST00000474089 TAF4-006 61953469-61998187 protein_coding
  ENST00000486599 TAF4-003 62008851-62010133 retained_intron
  ENST00000488539 TAF4-004 62000568-62007561 protein_coding
  ENST00000608458 TAF4-007 61975859-61981432 retained_intron
  ENST00000608887 TAF4-010 62012874-62064366 processed_transcript
  ENST00000609041 TAF4-008 62004509-62006995 retained_intron
  ENST00000609045 TAF4-011 62010067-62012883 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000252996ENST00000436129ENST00000488539ENST00000608458ENST00000609041
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000252996 3.371±0.00 2.512±0.00 N/A N/A 1.829±0.87 2.453±1.35 2.340±0.00 1.932±1.79 1.494±0.00 1.431±0.00 2.442±1.23 6.586±2.24 3.166±2.10 9.073±2.94
ENST00000436129 N/A N/A N/A 0.181±0.00 1.643±0.00 N/A N/A N/A N/A N/A 1.909±0.00 0.843±0.00 N/A N/A
ENST00000488539 N/A N/A 1.801±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608458 N/A N/A 0.789±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.376±0.00
ENST00000609041 N/A N/A N/A N/A N/A 0.471±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000693 CIL_000693_0002 CGP 20:61252426-62065810
CIL_0001DN CIL_0001DN_0001 CGP 20:61953469-62135378

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036750 TAF4 (1 of 2) TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa protein_coding Danio_rerio
ENSDARG00000068192 TAF4 (2 of 2) TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa protein_coding Danio_rerio
ENSMUSG00000039117 Taf4a TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Mus_musculus

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